View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15810_low_5 (Length: 274)

Name: NF15810_low_5
Description: NF15810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15810_low_5
NF15810_low_5
[»] chr3 (14 HSPs)
chr3 (31-264)||(33701265-33701504)
chr3 (95-205)||(42936731-42936842)
chr3 (94-201)||(33700820-33700928)
chr3 (121-198)||(8177715-8177792)
chr3 (19-90)||(33700714-33700786)
chr3 (19-90)||(42936626-42936697)
chr3 (19-73)||(48303948-48304002)
chr3 (19-78)||(34821539-34821598)
chr3 (19-78)||(38977891-38977950)
chr3 (19-51)||(42937115-42937147)
chr3 (19-78)||(2358766-2358825)
chr3 (19-78)||(47123063-47123122)
chr3 (19-78)||(47130429-47130488)
chr3 (19-78)||(51540757-51540818)
[»] chr4 (10 HSPs)
chr4 (121-205)||(7747607-7747691)
chr4 (19-78)||(25491538-25491597)
chr4 (19-78)||(48319208-48319266)
chr4 (19-76)||(19835485-19835542)
chr4 (19-78)||(3703393-3703452)
chr4 (19-78)||(7931623-7931682)
chr4 (19-78)||(32441776-32441835)
chr4 (19-78)||(54631606-54631665)
chr4 (19-78)||(55052762-55052821)
chr4 (25-78)||(49396979-49397032)
[»] chr7 (8 HSPs)
chr7 (19-90)||(28349215-28349286)
chr7 (19-78)||(43737081-43737140)
chr7 (94-168)||(28346177-28346255)
chr7 (97-150)||(28346423-28346477)
chr7 (19-78)||(3936065-3936124)
chr7 (19-78)||(28230611-28230669)
chr7 (22-78)||(9151774-9151830)
chr7 (19-78)||(36408327-36408387)
[»] chr5 (6 HSPs)
chr5 (19-76)||(38372228-38372285)
chr5 (19-78)||(40620133-40620192)
chr5 (19-76)||(4064865-4064922)
chr5 (25-78)||(12465249-12465302)
chr5 (19-76)||(39524695-39524752)
chr5 (26-78)||(26190441-26190493)
[»] chr8 (8 HSPs)
chr8 (19-78)||(27928084-27928143)
chr8 (19-78)||(42281037-42281096)
chr8 (19-78)||(44106180-44106239)
chr8 (19-78)||(8885596-8885655)
chr8 (19-78)||(28916740-28916799)
chr8 (19-69)||(36404306-36404356)
chr8 (19-73)||(41530626-41530680)
chr8 (19-76)||(21004347-21004404)
[»] chr2 (9 HSPs)
chr2 (19-78)||(44465866-44465925)
chr2 (19-78)||(25217928-25217987)
chr2 (19-78)||(33452581-33452640)
chr2 (19-78)||(39447119-39447178)
chr2 (19-76)||(17474939-17474996)
chr2 (19-78)||(45153929-45153988)
chr2 (19-52)||(25715320-25715353)
chr2 (19-78)||(32188007-32188067)
chr2 (23-78)||(41510566-41510622)
[»] chr1 (5 HSPs)
chr1 (19-73)||(43319344-43319398)
chr1 (19-78)||(32817754-32817813)
chr1 (19-78)||(44573239-44573298)
chr1 (19-78)||(7011166-7011225)
chr1 (19-51)||(49677450-49677482)
[»] chr6 (6 HSPs)
chr6 (23-78)||(1945672-1945727)
chr6 (19-78)||(7412785-7412844)
chr6 (19-78)||(33413489-33413548)
chr6 (19-78)||(17264367-17264426)
chr6 (19-78)||(23406753-23406812)
chr6 (19-76)||(14587705-14587762)
[»] scaffold0508 (1 HSPs)
scaffold0508 (19-52)||(3566-3599)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 33701504 - 33701265
Alignment:
Q  31 aaaaaatgagttacgaatttttctggattacgtaatccggaaacttcatttttccggattacaactacatgattttttcattaaa-tagggtgttattcc 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33701504 aaaaaatgagttacgaatttttccggattacgtaatccggaaacttcatttttccggattacaactacatgattttttcattaaaatagggtgttattcc 33701405  T
Q  130 taggattcttggtgctgctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggtaaactatatgatg-----aaaggtaaactatc 224  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  33701404 taggattcttggtgcatctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggtaaactatatgatgaattaaaaggtaaactatc 33701305  T
Q  225 atcaaacaatctcactgatgacaaacttgttttctccgcc 264  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33701304 atcaaacaatctcactgatgacaaacttgttttctccgcc 33701265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 42936731 - 42936842
Alignment:
Q  95 ctacatgattttttcattaaa-tagggtgttattcctaggattcttggtgctgctttggttgttcctattttgcaagttaatgtcatttggggagatgaa 193  Q
    |||||| ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42936731 ctacataattttttcaataaaatagggtgttattgctaggattcttggtgctgctttggttgttcctattttgcaagttcatgtcatttggggagatgaa 42936830  T
Q  194 aggtaaactata 205  Q
    ||||||||||||    
T  42936831 aggtaaactata 42936842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 33700820 - 33700928
Alignment:
Q  94 actacatgattttttcattaaa-tagggtgttattcctaggattcttggtgctgctttggttgttcctattttgcaagttaatgtcatttggggagatga 192  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  33700820 actacatgattttttcaataaaatagggtgttattgctaggattcttggtgctgctttggttgtttctattttgcaagttaatgtcatttgcggagatga 33700919  T
Q  193 aaggtaaac 201  Q
    |||||||||    
T  33700920 aaggtaaac 33700928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 8177715 - 8177792
Alignment:
Q  121 tgttattcctaggattcttggtgctgctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggta 198  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||    
T  8177715 tgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta 8177792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 33700714 - 33700786
Alignment:
Q  19 tgttaaagggtgaaaaaa-tgagttacgaatttttctggattacgtaatccggaaacttcatttttccggatt 90  Q
    |||||||||||||||||| || |||||||||||||  ||||||||||||||  ||||||||||||||| ||||    
T  33700714 tgttaaagggtgaaaaaaatgggttacgaattttttcggattacgtaatccataaacttcatttttccagatt 33700786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 42936626 - 42936697
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttcatttttccggatt 90  Q
    |||||||||||||||||| |||||||| |||||||  |||||   ||||| |||||||||||||||||||||    
T  42936626 tgttaaagggtgaaaaaaggagttacggatttttccagattataaaatccagaaacttcatttttccggatt 42936697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 48303948 - 48304002
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaa 73  Q
    ||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||    
T  48303948 tgttaaagggtgaaaaaatgagttacggatttttccggattttgtaatccggaaa 48304002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34821598 - 34821539
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| | ||||| |||||  |||||||||||||||||    
T  34821598 tgttaaagggtgaaaaaatgagtaacggaattttccggattttgtaatccggaaacttca 34821539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 38977950 - 38977891
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||| ||| ||| |||||||| ||||  |||||||||||||||||    
T  38977950 tgttaaagggtgaaaaaataagtaacggatttttctagattttgtaatccggaaacttca 38977891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 42937147 - 42937115
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttt 51  Q
    |||||||||||||||||||||||||||||||||    
T  42937147 tgttaaagggtgaaaaaatgagttacgaatttt 42937115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 2358825 - 2358766
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||| |||||||||||  |||||||| ||||| |||||||  |||||||||||||||||    
T  2358825 tgttatagggtgaaaaatggagttacggattttcctggattttgtaatccggaaacttca 2358766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 47123063 - 47123122
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| |||  |||||| | |||  |||||||||||||||||    
T  47123063 tgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttca 47123122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 47130429 - 47130488
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| |||  |||||| | |||  |||||||||||||||||    
T  47130429 tgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttca 47130488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 51540818 - 51540757
Alignment:
Q  19 tgttaaagggtgaaaaaa--tgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||  ||||| ||| |||||||||||||  | |||||||||||||||    
T  51540818 tgttaaagggtgaaaaaaaatgagtaacggatttttctggattttggaatccggaaacttca 51540757  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 7747607 - 7747691
Alignment:
Q  121 tgttattcctaggattcttggtgctgctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggtaaactata 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7747607 tgttattgctaggattcttggtgctgctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggtaaactata 7747691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 25491597 - 25491538
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| |||| |||||  |||||  |||||||||||||||||    
T  25491597 tgttaaagggtgaaaaaatgagtaacgagttttttcggattttgtaatccggaaacttca 25491538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 48319266 - 48319208
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| ||||||| |||||  |||||||||||||||||    
T  48319266 tgttaaagggtgaaaaaatgagtgacggatttttccggatt-tgtaatccggaaacttca 48319208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 19835485 - 19835542
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaactt 76  Q
    ||||||||||||||||||||||| |||  |||||| |||||  |||||||||||||||    
T  19835485 tgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaactt 19835542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 3703452 - 3703393
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||| ||||||||||||||||||||| ||||||  |||||  |||||||| ||||||||    
T  3703452 tgttatagggtgaaaaaatgagttacggattttttcggattttgtaatccgaaaacttca 3703393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7931623 - 7931682
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| |||  |||||| |||||  | |||||||||||||||    
T  7931623 tgttaaagggtgaaaaaatgagtaacgggtttttccggattttgcaatccggaaacttca 7931682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 32441776 - 32441835
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||| |||||||||||  |||||| | |||||||||||||  |||||||||||||||||    
T  32441776 tgttatagggtgaaaaatggagttaaggatttttctggattttgtaatccggaaacttca 32441835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 54631665 - 54631606
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||| |||||||||| |||  |||||| |||||  |||||||||||||||||    
T  54631665 tgttaaagggtggaaaaatgagtaacgggtttttccggattttgtaatccggaaacttca 54631606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 55052821 - 55052762
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||| |||||||||||  ||||||||  |||||| |||||| |||||||||||||||||    
T  55052821 tgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaacttca 55052762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 49396979 - 49397032
Alignment:
Q  25 agggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||  |||||||| ||||||| |||||  |||||||||||||||||    
T  49396979 agggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttca 49397032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 28349286 - 28349215
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttcatttttccggatt 90  Q
    ||||||| ||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||    
T  28349286 tgttaaatggtgaaaaaatgagttacgaatttttctgaattttgtaatccgaaaacttcatttttccggatt 28349215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 43737081 - 43737140
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| ||||||| |||||  |||||||||||||||||    
T  43737081 tgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttca 43737140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 28346177 - 28346255
Alignment:
Q  94 actacatgattttttc--attaaatagggtgttattcctaggattcttggtgc--tgctttggttgttcctattttgca 168  Q
    |||||||||||||||   || |||| |||||||||| |||||||||||||||   ||||||||||||||||||||||||    
T  28346177 actacatgatttttttcaataaaattgggtgttattgctaggattcttggtgtgatgctttggttgttcctattttgca 28346255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 28346477 - 28346423
Alignment:
Q  97 acatgattttttcattaaa-tagggtgttattcctaggattcttggtgctgcttt 150  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||    
T  28346477 acatgattttttcaataaaatagagtgttattgctaggattcttggtgctgcttt 28346423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 3936065 - 3936124
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||| |||||||||||||| |||  |||||| |||||  |||||||||||||||||    
T  3936065 tgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttca 3936124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 28230669 - 28230611
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||| ||||||||||| ||| ||||||| |||||  |||||||||||||||||    
T  28230669 tgttaaagggt-aaaaaatgagtaacggatttttccggattttgtaatccggaaacttca 28230611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 9151774 - 9151830
Alignment:
Q  22 taaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||||||||||| ||   |||||| |||||  |||||||||||||||||    
T  9151774 taaagggtgaaaaaatgagtaacaggtttttccggattttgtaatccggaaacttca 9151830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 36408327 - 36408387
Alignment:
Q  19 tgttaaagggtgaaaa-aatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||||||| ||||||| ||| ||||||| |||||  ||||||| |||||||||    
T  36408327 tgttaaagggtgaaaaaaatgagtaacggatttttccggattttgtaatccagaaacttca 36408387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 38372228 - 38372285
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaactt 76  Q
    ||||||||||||||||||||||| ||| |||||||||||||  |||||||||||||||    
T  38372228 tgttaaagggtgaaaaaatgagtaacggatttttctggattttgtaatccggaaactt 38372285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 40620192 - 40620133
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||| |||||||||||||||||| ||  ||||||| |||||  |||||||||||||||||    
T  40620192 tgttgaagggtgaaaaaatgagtaacagatttttccggattttgtaatccggaaacttca 40620133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 4064922 - 4064865
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaactt 76  Q
    ||||| |||||||||||  ||||||||  |||||| |||||| |||||||||||||||    
T  4064922 tgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaactt 4064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 12465302 - 12465249
Alignment:
Q  25 agggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||  |||||||| ||||||| |||||  |||||||||||||||||    
T  12465302 agggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttca 12465249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 39524695 - 39524752
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaactt 76  Q
    ||||||||||||||||||||||  | | ||||||| |||||  |||||||||||||||    
T  39524695 tgttaaagggtgaaaaaatgagcaatggatttttccggattttgtaatccggaaactt 39524752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 26190493 - 26190441
Alignment:
Q  26 gggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||  |||||||| ||||||| |||||  |||||||||||||||||    
T  26190493 gggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttca 26190441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 27928143 - 27928084
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| ||||||| |||||  |||||||||||||||||    
T  27928143 tgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttca 27928084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 42281096 - 42281037
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| ||||||||| ||||||||    
T  42281096 tgttaaagggtgaaaaaatgagtaacggatttttccggatttcgtaatccgaaaacttca 42281037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 44106180 - 44106239
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| |||||||  ||||  |||||||||||||||||    
T  44106180 tgttaaagggtgaaaaaatgagtaacggatttttccagattttgtaatccggaaacttca 44106239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 8885655 - 8885596
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||| |||||||||||||| |||  |||||| |||||  |||||||||||||||||    
T  8885655 tgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttca 8885596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 28916740 - 28916799
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||||||||||| || |||  |||||| |||||  |||||||||||||||||    
T  28916740 tgttaaagggtgaaaaaatgggtaacgggtttttccggattttgtaatccggaaacttca 28916799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 36404356 - 36404306
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccg 69  Q
    ||||||||||||||||||||||||||| ||| ||| |||||  ||||||||    
T  36404356 tgttaaagggtgaaaaaatgagttacggattattccggattttgtaatccg 36404306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41530626 - 41530680
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaa 73  Q
    |||||||||||| |||||||||||||| ||||||| | |||  ||||||||||||    
T  41530626 tgttaaagggtggaaaaatgagttacggatttttccgaattttgtaatccggaaa 41530680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 21004347 - 21004404
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaactt 76  Q
    ||||| |||||||||||  |||||||| ||||||| |||||  |||||||||||||||    
T  21004347 tgttatagggtgaaaaatggagttacggatttttccggattttgtaatccggaaactt 21004404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 44465925 - 44465866
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| ||||||| |||||  |||||||||||||||||    
T  44465925 tgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttca 44465866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 25217987 - 25217928
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| ||||||  |||||  |||||||||||||||||    
T  25217987 tgttaaagggtgaaaaaatgagtaacggattttttcggattttgtaatccggaaacttca 25217928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 33452640 - 33452581
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||| |||||||||| ||| |||||||||||||  ||||| |||||||||||    
T  33452640 tgttaaagggtggaaaaatgagtaacggatttttctggattttgtaattcggaaacttca 33452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 39447119 - 39447178
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||| ||||||| |||||  |||||||| ||||||||    
T  39447119 tgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccgaaaacttca 39447178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 17474996 - 17474939
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaactt 76  Q
    ||||||| ||||||||||||||| ||| ||||||| |||||  |||||||||||||||    
T  17474996 tgttaaaaggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaactt 17474939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 45153988 - 45153929
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| |||  |||||||| |||  |||||| ||||||||||    
T  45153988 tgttaaagggtgaaaaaatgagtaacgggtttttctgaattttgtaatctggaaacttca 45153929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 25715320 - 25715353
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaattttt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  25715320 tgttaaagggtgaaaaaatgagttacaaattttt 25715353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 32188067 - 32188007
Alignment:
Q  19 tgttaaagggtgaaaaaa-tgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||||||||| ||||| |||  ||||||||||||  |||||| ||||||||||    
T  32188067 tgttaaagggtgaaaaaaatgagtaacgggtttttctggattttgtaatctggaaacttca 32188007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 41510622 - 41510566
Alignment:
Q  23 aaagggtgaaaaaa-tgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    |||||||||||||| ||||| ||| |||||||  |||| ||||||||||||||||||    
T  41510622 aaagggtgaaaaaaatgagtaacggatttttccagatttcgtaatccggaaacttca 41510566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 43319398 - 43319344
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaa 73  Q
    ||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||    
T  43319398 tgttaaagggtgaaaaaatgagttacggatttttccggattttgtaatccggaaa 43319344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 32817813 - 32817754
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| |||  ||||||  ||||  |||||||||||||||||    
T  32817813 tgttaaagggtgaaaaaatgagtaacgggtttttccagattttgtaatccggaaacttca 32817754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 44573298 - 44573239
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||  ||||||  |||||  |||||||||||||||||    
T  44573298 tgttaaagggtgaaaaaatgagtaacagattttttcggattttgtaatccggaaacttca 44573239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7011166 - 7011225
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttt-tctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||||  |||||||||||||||||    
T  7011166 tgttaaagggtgaaaaa-tgagtaacggattttttctggattttgtaatccggaaacttca 7011225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 49677450 - 49677482
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttt 51  Q
    ||||||||||||||||||||||| |||||||||    
T  49677450 tgttaaagggtgaaaaaatgagtaacgaatttt 49677482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 1945727 - 1945672
Alignment:
Q  23 aaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| ||||||| |||||  |||||||| ||||||||    
T  1945727 aaagggtgaaaaaatgagttacggatttttccggattttgtaatccgaaaacttca 1945672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7412785 - 7412844
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||||||||||||||||||||| |||  |||||| |||||  |||||||||||||||||    
T  7412785 tgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttca 7412844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 33413548 - 33413489
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||| |||||||||||  |||||||||||||||||| |||  |||||||||||||||||    
T  33413548 tgttatagggtgaaaaatggagttacgaatttttctgaattttgtaatccggaaacttca 33413489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17264367 - 17264426
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||  |||||| ||||||||||    
T  17264367 tgttacagggtgaaaaaatgagtaacggatttttccggattttgtaatctggaaacttca 17264426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 23406753 - 23406812
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaacttca 78  Q
    ||||| |||||||||||  ||||||||| |||||| | ||| ||||||||||||||||||    
T  23406753 tgttatagggtgaaaaatggagttacgagtttttccgaatttcgtaatccggaaacttca 23406812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 14587762 - 14587705
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaatttttctggattacgtaatccggaaactt 76  Q
    ||||||||||||||||||||||| | | ||||||| |||||  |||||||| ||||||    
T  14587762 tgttaaagggtgaaaaaatgagtaagggatttttccggattttgtaatccgaaaactt 14587705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 3599 - 3566
Alignment:
Q  19 tgttaaagggtgaaaaaatgagttacgaattttt 52  Q
    ||||||||||||||||||||||| ||||||||||    
T  3599 tgttaaagggtgaaaaaatgagtaacgaattttt 3566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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