View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15811_low_2 (Length: 331)
Name: NF15811_low_2
Description: NF15811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15811_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 13798133 - 13798432
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13798133 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
13798232 |
T |
|
| Q |
118 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttnnnnnnngcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13798233 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttaaaaaaagcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
13798332 |
T |
|
| Q |
218 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtccttttcctatttatttctgaagtataat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
13798333 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtcctttttctatttatttctgaagtgtaat |
13798432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 13789514 - 13789721
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13789514 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
13789613 |
T |
|
| Q |
118 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttnnnnnnngcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13789614 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttaaaaaaagcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
13789713 |
T |
|
| Q |
218 |
catgggta |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
13789714 |
catgggta |
13789721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 11209949 - 11210248
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11209949 |
taaatggtgcgacacattgtatgcacgaaaatgcacgacagtgagaaaacatgacattttgacttttctatcatgaactaaaatttgatttgctcatagt |
11210048 |
T |
|
| Q |
118 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttnnnnnnngcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11210049 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttaaaaaaagcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
11210148 |
T |
|
| Q |
218 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtccttttcctatttatttctgaagtataat |
317 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11210149 |
caagggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtccttttcctatttatttctgaagtgtaat |
11210248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 8402645 - 8402944
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8402645 |
taaatggtgcgacacattgtatgcacgaaaatgcacgacagtgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
8402744 |
T |
|
| Q |
118 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttnnnnnnngcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8402745 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttaaaaaaaacacatattttaacaaaccacaataatggtgaaaagtctttggttt |
8402844 |
T |
|
| Q |
218 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtccttttcctatttatttctgaagtataat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8402845 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcataggaagccaatggaaagatatagtccttttcctatttatttctgaagtgtaat |
8402944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 51935151 - 51935450
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935151 |
taaatggtgcgacacattgtatgcacgaaaatgcacgacagtgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
51935250 |
T |
|
| Q |
118 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttnnnnnnngcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51935251 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttaaaaaaagcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
51935350 |
T |
|
| Q |
218 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtccttttcctatttatttctgaagtataat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
51935351 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccatcataggaagccaatggaaagatataatccttttcctatttatttctgaagtgtaat |
51935450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 34651793 - 34651494
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
34651793 |
taaatggtgcgacacattgtatgcacgaaaatgcacgacagtgagaaaacatgacaatttgacttttctatcatgaactaaaacttgatttacttatagt |
34651694 |
T |
|
| Q |
118 |
atagtacatgcattgtccttcatgcaagatatcctaaaaatggttttnnnnnnngcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34651693 |
atagtacatgcattgtccttcatgcaagatatcctaaaaacggttttaaaaaaagcacatattttaacaaaccacaataatggtgaaaagtctttggttt |
34651594 |
T |
|
| Q |
218 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtccttttcctatttatttctgaagtataat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
34651593 |
catgggtacttgagatcagtgagtcacatggtggtgagcaccgtcataggaagccaatggaaagatatagtcattttcctatttatttctgaagtgtaat |
34651494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 51930116 - 51930199
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51930116 |
taaatggtgcgacacattgtatgcacgaaaatgcacgacagtgagaaaacatgacattttgacttttctatcatgaactaaaac |
51930199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 31367350 - 31367652
Alignment:
| Q |
18 |
taaatggtgcgacacattgtatgcacgaaaatgcatgacagcgagaaaacatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31367350 |
taaatggtgcaacacattgtatgcacgaaaatgcacgacagttaaaaaatatgacattttgacttttctatcatgaactaaaacttgatttgctcatagt |
31367449 |
T |
|
| Q |
118 |
atagtaca---tgcattgtccttcatgcaagatatcctaaaaatggttttnnnnnnngcacatattttaacaaaccacaataatggtgaaaagtctttgg |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31367450 |
atagtacaatatgcattgtccttcatgcaagatatcctaaaaatggttttaaaaaaagcacaaattttaacaaaccacaataatggtgaaaagtctttgg |
31367549 |
T |
|
| Q |
215 |
tttcatgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacagaaagccaatggaaagatatagtccttttcctatttatttctgaagtat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31367550 |
tttcatgggtacttgagatcagtgagtcacatggtggtgagcaccgtcacaagaaaccaatggaaagatatagtccttttcctatttatttctgaagtgt |
31367649 |
T |
|
| Q |
315 |
aat |
317 |
Q |
| |
|
||| |
|
|
| T |
31367650 |
aat |
31367652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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