View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15812_high_3 (Length: 300)

Name: NF15812_high_3
Description: NF15812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15812_high_3
NF15812_high_3
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-295)||(150238-150514)


Alignment Details
Target: scaffold0007 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 150514 - 150238
Alignment:
Q  19 tgagaagatctcattcttgatcccataaactgtgaaagttcttcaaaaacttcttcatcaaaagaagctggtaacctatgcaactttctttcataaggtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  150514 tgagaagatctcattcttgatcccataaactgtgaaagttcttcaaaaacttcttcatcaaaagaagctggtaacctatgcaactttctttcataaggtg 150415  T
Q  119 acagtctaaaatagcttttaccaacttgttctctttccccacctctttcccattcataaactttcctaaactcacctaacatgttatcccattttgtacc 218  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  150414 aaagtctaaaatagcttttaccaacttgttctctttcaccacctctttcccattcataaactttcctaaactcacctaacatgttatcccattttgtacc 150315  T
Q  219 tgctgtttttgcatctctattaacaccatgtttgtttagaaattcagctacttctttgtctttatcagctcttgttt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  150314 tgctgtttttgcatctctattaacaccatgtttgtttagaaattcagctacttctttgtctttatcagctcttgttt 150238  T

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