View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15812_low_1 (Length: 411)
Name: NF15812_low_1
Description: NF15812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15812_low_1 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 29568772 - 29568378
Alignment:
| Q |
1 |
atctcgtctaactgggattttgttagagatctaagatcctttccttcagggtccaaaaatactcccggttcgaaaaatgatatctctagcctcttttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568772 |
atctcgtctaactgggattttgttagagatctaagatcctttccttcagggtccaaaaatactcccggttcgaaaaatgatatctctagcctcttttcaa |
29568673 |
T |
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| Q |
101 |
agccttcaaaaccgattgaagaaactgccaaggccatattgtttcagaaaaagaaaatgcacagcaccaaaacccgaaagcagtgaacaacgacagcaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29568672 |
agccttcaaaaccgattgaagaaactgccaaggccatattgtttcagaaaaagaaaatgcacagcaccaaaacccgaaagcagtgaacaacaacagcaca |
29568573 |
T |
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| Q |
201 |
attgcaaaaatagagactggaaagacgtcgtttgaagaagagtactgaatgattaaaattctaacgaaaataaacgcaactaagaaaacacgtttcgagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568572 |
attgcaaaaatagagactggaaagacgtcgtttgaagaagagtactgaatgattaaaattctaacgaaaataaacgcaactaagaaaacacgtttcgagc |
29568473 |
T |
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| Q |
301 |
aaaagtagatcaggatggcttcctagcacactgcacataattaacaaatacatgtattagcacaagtccataatcaaataagattagtttccaac |
395 |
Q |
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| T |
29568472 |
aaaagtagatcaggatggcttcctagcacactgcacataattaacaaatacatgtattagcacaagtcattaatcaaataagattagtttccaac |
29568378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 363531 - 363578
Alignment:
| Q |
69 |
ttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
116 |
Q |
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| T |
363531 |
ttcgaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
363578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 5903398 - 5903445
Alignment:
| Q |
69 |
ttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
116 |
Q |
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| T |
5903398 |
ttcgaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
5903445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 5911805 - 5911758
Alignment:
| Q |
69 |
ttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
116 |
Q |
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| T |
5911805 |
ttcgaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
5911758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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