View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15812_low_5 (Length: 287)
Name: NF15812_low_5
Description: NF15812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15812_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 40095052 - 40094801
Alignment:
| Q |
16 |
attctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaacacaattgatgac |
115 |
Q |
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| T |
40095052 |
attctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaagacaattgatgac |
40094953 |
T |
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| Q |
116 |
tgctcttggttggagcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatc |
215 |
Q |
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| T |
40094952 |
tgctcttgg----agcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatc |
40094857 |
T |
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| Q |
216 |
agttgatactccaatactacaacttcttgatccaatgcaggcctgttaataagatg |
271 |
Q |
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| T |
40094856 |
ggttgatactccaatactacaacttcttgatccaatgcaggcctgttaataagatg |
40094801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 40082813 - 40082562
Alignment:
| Q |
16 |
attctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaacacaattgatgac |
115 |
Q |
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| T |
40082813 |
attctaagtgaaaaataaaaaattgggatgttcctagaatacaattctaatttagatagggaagatgaattgaagataagagttgaacacaattgaggac |
40082714 |
T |
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| Q |
116 |
tgctcttggttggagcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatc |
215 |
Q |
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| T |
40082713 |
tgctcttag----agcaacatgttacatgtttgtctatgcacaagtagcttcaacagctaaacttttcggtactcctctacaagggtctccaaatgtatc |
40082618 |
T |
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| Q |
216 |
agttgatactccaatactacaacttcttgatccaatgcaggcctgttaataagatg |
271 |
Q |
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| T |
40082617 |
agttgatactccaacactacaacttcttgatccaatgcaggcctgttaataagatg |
40082562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 40063989 - 40063872
Alignment:
| Q |
154 |
gcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatcagttgatactccaatactacaacttcttgatccaatgc |
253 |
Q |
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| T |
40063989 |
gcacaagtagcttcaacagctaaactctttggcactcctctacaagggtctccaaatgtatcggttgatactccaatactacaacttcttgatccaatgc |
40063890 |
T |
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| Q |
254 |
aggcctgttaataagatg |
271 |
Q |
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| T |
40063889 |
aggcctgttaataagatg |
40063872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 22011868 - 22011979
Alignment:
| Q |
150 |
ctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatcagttgatactccaatactacaacttcttgatcca |
249 |
Q |
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| T |
22011868 |
ctatgtacaagcagcttcaacagctaagctctttgttactcctcggcatggatttccaaatgtattaattgatactccaatattacaactgctcgatcca |
22011967 |
T |
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| Q |
250 |
atgcaggcctgt |
261 |
Q |
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| T |
22011968 |
atgcaggcctgt |
22011979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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