View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15812_low_6 (Length: 275)
Name: NF15812_low_6
Description: NF15812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15812_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 257
Target Start/End: Complemental strand, 8541007 - 8540786
Alignment:
| Q |
36 |
tactattaccattccgtttacaatattaaacccttacgaagacag--taaattttctaaaattaagtctccatggtgtatatttctacaacagagtttca |
133 |
Q |
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| T |
8541007 |
tactactacgattcagtttacaatattaaacccttacgaagacagagtagattttctaaaattaagcctccatggt--atatttctacaacagagtttca |
8540910 |
T |
|
| Q |
134 |
atgaacatttcatactttaacaattttcagtcgatatttgaattaattgcttacagggaccaagttttagatttcttatgtgcttttgtattatttttta |
233 |
Q |
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| T |
8540909 |
atgaacatttcatactttaacaattttcagtcgatattttaattaattgtttacagggaccaagttttatatttcttatgtgcttttgtattatttttta |
8540810 |
T |
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| Q |
234 |
gagaaaccaactctagtcaataag |
257 |
Q |
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|||||||||||||||||||||||| |
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| T |
8540809 |
gagaaaccaactctagtcaataag |
8540786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 8543058 - 8542915
Alignment:
| Q |
36 |
tactattaccattccgtttacaatattaaacccttacgaagacag--taaattttctaaaattaagtctccatggtgtatatttctacaacagagtttca |
133 |
Q |
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| T |
8543058 |
tactactacgattcagtttacaatattaaacccttacgaagacagagtagattttctaaaattaagcctccatggt--atatttctacaacatagtttca |
8542961 |
T |
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| Q |
134 |
atgaacatttcatactttaacaattttcagtcgatatttgaattaa |
179 |
Q |
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| T |
8542960 |
atgaacatttcatactttaacaattttcagtccatattttaattaa |
8542915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 8542606 - 8542523
Alignment:
| Q |
174 |
aattaattgcttacagggaccaagttttagatttcttatgtgcttttgtattattttttagagaaaccaactctagtcaataag |
257 |
Q |
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| T |
8542606 |
aattaattgtttacagggaccaagttttagatttctcatgtgcttttttattattttttagagaaaccaactctagtcaataag |
8542523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 28476109 - 28475994
Alignment:
| Q |
149 |
tttaacaattttcagtcgatatttgaattaattgcttacagggaccaagttttagatttcttatg-------tgcttttgtattattttttagagaaacc |
241 |
Q |
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| T |
28476109 |
tttaacaatttctagtcgatattttaattaattgtttagagggaccaagttttagatttcttatgagtattattcttttgtattattttttagagaaacc |
28476010 |
T |
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| Q |
242 |
aactctagtcaataag |
257 |
Q |
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| T |
28476009 |
aactcgagtcgataag |
28475994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 28475368 - 28475300
Alignment:
| Q |
143 |
tcatactttaacaattttcagtcgatatttgaattaattgcttacagggaccaagttttagatttctta |
211 |
Q |
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| T |
28475368 |
tcatactttaacaattttcagtcgatactttaattaattgtttacagtgaccaagttctagatttctta |
28475300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 28140421 - 28140486
Alignment:
| Q |
143 |
tcatactttaacaattttcagtcgatatttgaattaattgcttacagggaccaagttttagatttc |
208 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||| |
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| T |
28140421 |
tcatgctttaacaattttcagtcgatattttaattaattgtttacagtgaccaagttctagatttc |
28140486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 27905470 - 27905534
Alignment:
| Q |
143 |
tcatactttaacaattttcagtcgatatttgaattaattgcttacagggaccaagttttagattt |
207 |
Q |
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| T |
27905470 |
tcatactttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagattt |
27905534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 28501155 - 28501096
Alignment:
| Q |
152 |
aacaattttcagtcgatatttgaattaattgcttacagggaccaagttttagatttctta |
211 |
Q |
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| T |
28501155 |
aacaattttcagtcaatattttaattaattgtttacagtgaccaagttgtagatttctta |
28501096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 28127032 - 28127077
Alignment:
| Q |
143 |
tcatactttaacaattttcagtcgatatttgaattaattgcttaca |
188 |
Q |
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||||||||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
28127032 |
tcatactttaacaattttcagtcaatattttaattaattgtttaca |
28127077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 28516450 - 28516405
Alignment:
| Q |
143 |
tcatactttaacaattttcagtcgatatttgaattaattgcttaca |
188 |
Q |
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|||||||||||| |||||||||| |||||| ||||||||| ||||| |
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| T |
28516450 |
tcatactttaacgattttcagtccatattttaattaattgtttaca |
28516405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 9392840 - 9392809
Alignment:
| Q |
214 |
tgcttttgtattattttttagagaaaccaact |
245 |
Q |
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| T |
9392840 |
tgcttttgtattattttttagagaaaccaact |
9392809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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