View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_high_11 (Length: 291)
Name: NF15813_high_11
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 25340046 - 25340309
Alignment:
| Q |
11 |
agcataggggaactggttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacacaaat |
110 |
Q |
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| T |
25340046 |
agcattggggaactggttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacacaaat |
25340145 |
T |
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| Q |
111 |
atcagagtatagaattgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgc |
210 |
Q |
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| T |
25340146 |
atcagagtatagaattgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgt |
25340245 |
T |
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| Q |
211 |
atacattggtgtttgcctggtgttccagatacatggaatcaaatatttttggcaatgttataac |
274 |
Q |
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| T |
25340246 |
atacattggtgtttgcctggtgttccagatacatggaatcaaatatttttggcaatgttataac |
25340309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 5232721 - 5232973
Alignment:
| Q |
17 |
ggggaactggttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacacaaatatcaga |
116 |
Q |
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| T |
5232721 |
ggggaagtggttcaaataaaggtatgatgagtgttgtagccaaagttatcaagaaaatgaaagttccagtaacagtcatcaatattacacaaatttctga |
5232820 |
T |
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| Q |
117 |
gtatagaattgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgcatacat |
216 |
Q |
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| T |
5232821 |
gtatagaattgatggtcattcctcagtttatactgaaactggtggcaaattgttaaatgaagaggaaaggactaatccattgaatgctgattgtatacat |
5232920 |
T |
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| Q |
217 |
tggtgtttgcctggtgttccagatacatggaatcaaatatttttggcaatgtt |
269 |
Q |
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| T |
5232921 |
tggtgtttgcctggtgttcctgatacttggaatcaaatattctttgcaatgtt |
5232973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 51877588 - 51877539
Alignment:
| Q |
205 |
gattgcatacattggtgtttgcctggtgttccagatacatggaatcaaat |
254 |
Q |
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| T |
51877588 |
gattgcttacactggtgtttgcctggtgttcctgatacatggaatgaaat |
51877539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 4075309 - 4075260
Alignment:
| Q |
200 |
atgcagattgcatacattggtgtttgcctggtgttccagatacatggaat |
249 |
Q |
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| T |
4075309 |
atgcagattgcatacattggtgtctccctggtgtgcctgatacttggaat |
4075260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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