View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_high_6 (Length: 346)
Name: NF15813_high_6
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 75 - 330
Target Start/End: Complemental strand, 2769524 - 2769269
Alignment:
| Q |
75 |
atgacacttggggtcatattcatagtataaatacgatgcacaatactttttattatagagggtaatttttgttaaacaannnnnnnngcagacttaatta |
174 |
Q |
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| T |
2769524 |
atgacacttggggtcatattcatagtataaatacgatgcacaatactttttattatagagggtaatttttgttaaacaattttttttgcagacttaatta |
2769425 |
T |
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| Q |
175 |
atttcacaattaaattaagcataaaaatgtacattgctaaccacttttaaaacataaatttcattaactactttgattatttcgtcaatcacaaaaatac |
274 |
Q |
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| T |
2769424 |
atttcacaattaaattaagcataaaaatgtacattgctaaccacttttaaaacataaatttcattaactactttgattatttcgtcaatcacaaaaatac |
2769325 |
T |
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| Q |
275 |
aaagcattaacaaattactttacatagtttcaaaattgacaaaagcatgtagattc |
330 |
Q |
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| T |
2769324 |
aaagcattaacaaattattttacatagtttcaaaattgacaaaagtatgtagattc |
2769269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 22341720 - 22341672
Alignment:
| Q |
208 |
ttgctaaccacttttaaaacataaatttcattaactactttgattattt |
256 |
Q |
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| T |
22341720 |
ttgctaatcacttttttaacatgaatttcattaactactttgagtattt |
22341672 |
T |
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