View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15813_low_1 (Length: 816)

Name: NF15813_low_1
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15813_low_1
NF15813_low_1
[»] chr2 (2 HSPs)
chr2 (412-802)||(31405463-31405859)
chr2 (352-413)||(31409430-31409491)
[»] chr4 (18 HSPs)
chr4 (412-802)||(14205248-14205644)
chr4 (136-306)||(30179490-30179660)
chr4 (303-401)||(30179372-30179470)
chr4 (352-413)||(14209194-14209255)
chr4 (352-413)||(14210145-14210206)
chr4 (352-413)||(14211114-14211175)
chr4 (352-413)||(14212065-14212126)
chr4 (352-413)||(14213034-14213095)
chr4 (352-413)||(14214971-14215032)
chr4 (352-413)||(14215940-14216001)
chr4 (352-413)||(14216891-14216952)
chr4 (352-413)||(14217842-14217903)
chr4 (352-413)||(14218812-14218873)
chr4 (352-413)||(14219781-14219842)
chr4 (352-413)||(14220732-14220793)
chr4 (352-413)||(14221701-14221762)
chr4 (352-413)||(14222670-14222731)
chr4 (362-413)||(14214012-14214063)
[»] chr6 (1 HSPs)
chr6 (138-413)||(2967808-2968083)
[»] chr1 (3 HSPs)
chr1 (226-413)||(40981192-40981379)
chr1 (344-413)||(50290720-50290789)
chr1 (144-227)||(24036400-24036483)
[»] chr3 (2 HSPs)
chr3 (254-413)||(14458894-14459053)
chr3 (254-413)||(12812535-12812694)
[»] chr7 (1 HSPs)
chr7 (136-269)||(43903834-43903967)
[»] chr5 (1 HSPs)
chr5 (140-233)||(22009254-22009343)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 412 - 802
Target Start/End: Original strand, 31405463 - 31405859
Alignment:
Q  412 tgatacactcgatacgttgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 511  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31405463 tgatacactctatacgttgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 31405562  T
Q  512 ccatcagtgtccatcatatcaaacttttgttccaattccgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 611  Q
    |||||| ||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31405563 ccatcaatgtacatcatataaaacttttgttccaatcctgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 31405662  T
Q  612 caaaaaaggacaatctccctattgaacaaacctcctggtggtgataaaaaatatatattatataaatgctagt------tataagttttcttatgccact 705  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||    
T  31405663 caaaaaaggacgatctccctattgaacaaacctcctggtggtgataaaaaatatatattatataaatgctagttactcctataagttttcttatgccact 31405762  T
Q  706 gattgatacatatgttaaattaaccaaagtctcggtgagtaaattaacgcgtttcttatttcttaatgtaccataacctgttgtcactaccattctg 802  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31405763 gattgatacatatgttaaattaaccaaagtctcagtgagtaaactaacgcgtttcttatttcttaatgtaccataacctgttgtcactaccattctg 31405859  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 31409430 - 31409491
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31409430 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 31409491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 412 - 802
Target Start/End: Original strand, 14205248 - 14205644
Alignment:
Q  412 tgatacactcgatacgttgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 511  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14205248 tgatacactctatacgctgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 14205347  T
Q  512 ccatcagtgtccatcatatcaaacttttgttccaattccgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 611  Q
    |||||| ||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14205348 ccatcaatgtacatcatattaaacttttgttccaatcctgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 14205447  T
Q  612 caaaaaaggacaatctccctattgaacaaacctcctggtggtgataaaaaatatatattatataaatgctagt------tataagttttcttatgccact 705  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||    
T  14205448 caaaaaaggacgatctccctattgaacaaacctcctggtggtgataaaaaatatatattatataaatgctagttactcctataagttttcttatgccact 14205547  T
Q  706 gattgatacatatgttaaattaaccaaagtctcggtgagtaaattaacgcgtttcttatttcttaatgtaccataacctgttgtcactaccattctg 802  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14205548 gattgatacatatgttaaattaaccaaagtctcagtgagtaaactaacgcgtttcttatttcttaatgtaccataacctgttgtcactaccattctg 14205644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 136 - 306
Target Start/End: Complemental strand, 30179660 - 30179490
Alignment:
Q  136 aggattcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaatgg 235  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||| | |    
T  30179660 aggattcaaaatggaaccttttggaatcagtgatggaggagaatcagaagattggggtgagaatctgaaatcgctaatggtgacggacagttgagactcg 30179561  T
Q  236 ttaatccatctgaaggacctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgatagg 306  Q
    |||||||||||||||||   ||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  30179560 ttaatccatctgaaggaatggaaaagttgtcgttggtggcgccaccggtggtttggaagatcggcgatagg 30179490  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 303 - 401
Target Start/End: Complemental strand, 30179470 - 30179372
Alignment:
Q  303 taggttgtgtgaagaagccgaagcagttttggataaagaggaggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggt 401  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  30179470 taggtggtgtgaagaagccgaagcagttttggatgaagagaaggcggtgaaggagtttgtttaggtggagtgtgaagaggagatggtgagatgcttggt 30179372  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14209194 - 14209255
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14209194 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14209255  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14210145 - 14210206
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14210145 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14210206  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14211114 - 14211175
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14211114 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14211175  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14212065 - 14212126
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14212065 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14212126  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14213034 - 14213095
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14213034 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14213095  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14214971 - 14215032
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14214971 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14215032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14215940 - 14216001
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14215940 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14216001  T

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Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14216891 - 14216952
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14216891 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14216952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14217842 - 14217903
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14217842 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14217903  T

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Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14218812 - 14218873
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14218812 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14218873  T

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Target: chr4; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14219781 - 14219842
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14219781 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14219842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14220732 - 14220793
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14220732 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14220793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14221701 - 14221762
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14221701 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14221762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14222670 - 14222731
Alignment:
Q  352 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14222670 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14222731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 14214012 - 14214063
Alignment:
Q  362 tttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14214012 tttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14214063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 138 - 413
Target Start/End: Original strand, 2967808 - 2968083
Alignment:
Q  138 gattcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaatggtt 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||    
T  2967808 gattcaaaatcgaaccttttgaactcagtgatggaggagaatcagaagattgagttgagaatttgaaatcgctgacggtgaaggacggttgagaatcgtt 2967907  T
Q  238 aatccatctgaaggacctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggata 337  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2967908 aatccatctgaaggacctgaaaagttgtcgttggtggcgccgccgatggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggatg 2968007  T
Q  338 aagaggaggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  2968008 aagaggaggcggtgaaggagtctgtttggatggagtgtgaagaggagatggtgagatgtttggtctccgatggatg 2968083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 226 - 413
Target Start/End: Original strand, 40981192 - 40981379
Alignment:
Q  226 ttgagaatggttaatccatctgaaggacctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaag 325  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40981192 ttgagaatcgttaatccatctgaagaacctgaaaagttgtcgttggtggcgccgccggtggtttggaagatcggtgataggttgtgtgaagaagccggag 40981291  T
Q  326 cagttttggataaagaggaggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40981292 cagttttggatgaagaggaggcggtgaaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtctccgatggatg 40981379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 50290789 - 50290720
Alignment:
Q  344 aggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  50290789 aggcggtgaaggagtctgtttgtgtggagtgtgaagaggagatggtgagatgcttggtctccgatggatg 50290720  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 24036400 - 24036483
Alignment:
Q  144 aaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggtt 227  Q
    |||| ||||||||  |||||| ||||||||||||||||  ||  | || |||||||||||||||| ||| ||||||||| ||||    
T  24036400 aaattgaacctttaagactcaatgatggaggagaatcaacaggcttggatgagaatctgaaatcgttaatggtgaaggatggtt 24036483  T

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Target: chr3 (Bit Score: 120; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 254 - 413
Target Start/End: Original strand, 14458894 - 14459053
Alignment:
Q  254 ctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggataaagaggaggcggtgaa 353  Q
    ||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14458894 ctgaaaaattgtcgttcatggcgccgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggatgaagaggaggcggtgaa 14458993  T
Q  354 ggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
     |||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  14458994 agagtctatttgggtggaatgtgaagaggagatggtgagatgcttggtctccgatggatg 14459053  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 254 - 413
Target Start/End: Original strand, 12812535 - 12812694
Alignment:
Q  254 ctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggataaagaggaggcggtgaa 353  Q
    ||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||    
T  12812535 ctgaaaagttgtcgttggtggcgccgccagtggtttggaagatgggtgataggttgtgtgaagaagccgaagtagttttggatgaagaagaggctgtgaa 12812634  T
Q  354 ggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 413  Q
    ||||||  ||||| |||||||||||||||||||||| |||||||| || |||||||||||    
T  12812635 ggagtctatttggttggagtgtgaagaggagatggtaagatgctttgtctccgatggatg 12812694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 136 - 269
Target Start/End: Complemental strand, 43903967 - 43903834
Alignment:
Q  136 aggattcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaatgg 235  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  |||| |||| ||||||||||||||| |||| |||||||||| ||||||||| |    
T  43903967 aggattcaaaatcgaaccttctggactcagtgatggaggagaatcgaaagaatggggtgagaatctgaaatcactaatggtgaaggactgttgagaatcg 43903868  T
Q  236 ttaatccatctgaaggacctgaaaagttgtcgtt 269  Q
    ||||||||||||||||||  ||||||||||||||    
T  43903867 ttaatccatctgaaggactggaaaagttgtcgtt 43903834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 22009254 - 22009343
Alignment:
Q  140 ttcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaat 233  Q
    ||||||||||||||    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||    
T  22009254 ttcaaaatcgaacc----ggactcagtgatgcaggagaatcagaagattggggtgagaatctgaaatcgctaatggtgaaggatggttaagaat 22009343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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