View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_low_11 (Length: 326)
Name: NF15813_low_11
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 2769609 - 2769797
Alignment:
| Q |
12 |
ttttcactcgatctttctctttccatcatatctatcaatcatcctctctannnnnnnctcaatgtattatttgagtgtataaatgtccatgaaatatttt |
111 |
Q |
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| T |
2769609 |
ttttctctcgatctttctctttccatcatatctatcaatcatcctctctatttttttctcaatgtattatttaagtgtataaatgtccatgaaatatttt |
2769708 |
T |
|
| Q |
112 |
cctttccttatgagataatcatttttactatttgtatcattagttccttttgaatcgtttattttacccatacatgaactatttgtatc |
200 |
Q |
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| T |
2769709 |
cctttccttatgatataatcatttttactatttgtatcattagttcattttgaatcgtttattttacccatacatgaactatttgtatc |
2769797 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 185 - 322
Target Start/End: Original strand, 2769813 - 2769950
Alignment:
| Q |
185 |
atgaactatttgtatcataagttcttttcaaatcttttacccatacatgaaatagtgacagacaaagtgtcgaagaaatattttaaaaatttaaatattt |
284 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2769813 |
atgaactatttgtatcataaattcttttcgaatcttttacccatacataaaatagtgactgacaaagtgtcgaagaaatattttaaaaatttaaatattt |
2769912 |
T |
|
| Q |
285 |
atcttttcaatacaaaatttatacatttctccgctctg |
322 |
Q |
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| T |
2769913 |
atcttttcaatacaaaatttatacatttctctgctctg |
2769950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 12453956 - 12453916
Alignment:
| Q |
261 |
aatattttaaaaatttaaatatttatcttttcaatacaaaa |
301 |
Q |
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| T |
12453956 |
aatatcttaaaaatttaaaaatttatcttttcaatgcaaaa |
12453916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 30989551 - 30989508
Alignment:
| Q |
263 |
tattttaaaaatttaaatatttatcttttcaatacaaaatttat |
306 |
Q |
| |
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|||| ||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
30989551 |
tattataaaagtttaaatatttatattttcaatacaaaatttat |
30989508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 2233930 - 2233885
Alignment:
| Q |
261 |
aatattttaaaaatttaaatatttatcttttcaatacaaaatttat |
306 |
Q |
| |
|
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|
| T |
2233930 |
aatattctaaaaatttaaaattttatcttttcaaaacaaaatttat |
2233885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 37400727 - 37400769
Alignment:
| Q |
265 |
ttttaaaaa-tttaaatatttatcttttcaatacaaaatttat |
306 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
37400727 |
ttttaaaaagtttaaatatttatcttttcaatacacaatttat |
37400769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 37276841 - 37276800
Alignment:
| Q |
265 |
ttttaaaaatttaaatatttatcttttcaatacaaaatttat |
306 |
Q |
| |
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|||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
37276841 |
ttttaaaagtttaaacatttatcatttcaatacaaaatttat |
37276800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 4059171 - 4059127
Alignment:
| Q |
262 |
atattttaaaaatttaaatatttatcttttcaatacaaaatttat |
306 |
Q |
| |
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|||||||| ||||||||| ||||||||||||| ||||||||||| |
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| T |
4059171 |
atattttagaaatttaaaattttatcttttcaagacaaaatttat |
4059127 |
T |
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