View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15813_low_12 (Length: 319)

Name: NF15813_low_12
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15813_low_12
NF15813_low_12
[»] chr1 (6 HSPs)
chr1 (19-319)||(24137927-24138221)
chr1 (24-290)||(24133583-24133840)
chr1 (80-144)||(24133393-24133457)
chr1 (19-96)||(24133306-24133383)
chr1 (224-304)||(24124109-24124190)
chr1 (273-319)||(24133852-24133902)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 24137927 - 24138221
Alignment:
Q  19 aggttaagatcatatcgtctatattataacttcaacaaaatatatgtttcctcataagaataaaaatcaatgattgagactataaactacataaatgcat 118  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||      ||||    
T  24137927 aggttaagatcatatcgtccatattataagttcaacaaaatatatgtttcctcatatgaataaaaatcaatgattgagactataaactac------gcat 24138020  T
Q  119 gatcacatggaatccaattctcaagtgtccccatctctttcttcttgtttccacctttcatcttcctaccttctcggagagtaattaacattgtttcatt 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24138021 gagcacatggaatccaattctcaagtgtccccatctctttcttcttgtttccacctttcatcttcctaccttctcggagagtaattaacattgtttcatt 24138120  T
Q  219 cattaattaatggtccctcaattaatatatgattgacttttatgtagtgaaattgacttcacagtaccatttgtcttggtcaatcttctcgtcatataaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24138121 cattaattaatggtccctcaattaatatatgattgacttttatgtagtgaaattgacttcacagtaccatttgtcttggtcaatcttctcgtcatataaa 24138220  T

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Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 290
Target Start/End: Original strand, 24133583 - 24133840
Alignment:
Q  24 aagatcatatcgtctatattataacttcaacaaaatatatgtttcctcataagaataaaaatcaatgattgagactataaactacataaatgcatgatca 123  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||| ||| |||||||||||||||||||||  ||||| |||||||||||| ||    
T  24133583 aagatcatatcgtctatattataacttcaa---aatatatgtttcctcatatgaagaaaaatcaatgattgagacta--aactatataaatgcatgacca 24133677  T
Q  124 catggaatccaattctcaagtgtccccatctctttcttcttgtttccacctttcatcttcctaccttctcggagagtaattaacattgtttcattcatta 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  24133678 catggaatccaattctcaagtgtccccatctctttcttcttgtttccacctttcatcttcctaccttctcggagagtaattaacattgtttcattc---- 24133773  T
Q  224 attaatggtccctcaattaatatatgattgacttttatgtagtgaaattgacttcacagtaccattt 290  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||||    
T  24133774 attaatggtccctcaattaatttattattgacttttatgtaatgaaattaacttcacagtaccattt 24133840  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 24133393 - 24133457
Alignment:
Q  80 aaaaatcaatgattgagactataaactacataaatgcatgatcacatggaatccaattctcaagt 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24133393 aaaaatcaatgattgagactataaactacataaatgcatgaccacatggaatccaattctcaagt 24133457  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 24133306 - 24133383
Alignment:
Q  19 aggttaagatcatatcgtctatattataacttcaacaaaatatatgtttcctcataagaataaaaatcaatgattgag 96  Q
    ||||||| ||||||||||| |||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  24133306 aggttaaaatcatatcgtccatattaaaagttcaacaaaatatatatttcctcatatgaataaaaatcaatgattgag 24133383  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 24124109 - 24124190
Alignment:
Q  224 attaatggtccctcaattaatatatgattgacttttatgtagtgaaattgacttcac-agtaccatttgtcttggtcaatct 304  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||    
T  24124109 attaatggtccctcaattaatttgagattgacttttatgtagtgaacttgacttcacaattaccacttgtcttggtcaatct 24124190  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 24133852 - 24133902
Alignment:
Q  273 gacttcacagtaccatttgtcttggtca----atcttctcgtcatataaac 319  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||    
T  24133852 gacttcacagtaccatttgtcttggtcaatatatcttctcgtcatataaac 24133902  T

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