View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15813_low_15 (Length: 257)

Name: NF15813_low_15
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15813_low_15
NF15813_low_15
[»] chr2 (9 HSPs)
chr2 (1-240)||(28651044-28651283)
chr2 (1-240)||(28642183-28642422)
chr2 (1-240)||(28670766-28671005)
chr2 (57-240)||(28674910-28675093)
chr2 (77-240)||(28691386-28691549)
chr2 (66-240)||(28696271-28696445)
chr2 (178-240)||(28717589-28717651)
chr2 (60-167)||(28741514-28741621)
chr2 (32-121)||(28733368-28733457)
[»] chr4 (1 HSPs)
chr4 (164-240)||(41238469-41238545)
[»] chr1 (1 HSPs)
chr1 (169-227)||(33769111-33769169)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28651283 - 28651044
Alignment:
Q  1 acaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaa 100  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28651283 acaaaagttccacgcatgttctattgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaa 28651184  T
Q  101 aaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28651183 aaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaat 28651084  T
Q  201 tccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  28651083 tccagttcatgttttgcatgagatgatcaaaggaacttgt 28651044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28642422 - 28642183
Alignment:
Q  1 acaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaa 100  Q
    ||||||||||||| ||||||||||   |||||||||  ||||||  ||| | |||  | ||||| |||| ||||||| ||||||||||||||||||||||    
T  28642422 acaaaagttccacacatgttctattgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccctacaattgacttaa 28642323  T
Q  101 aaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28642322 aaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaat 28642223  T
Q  201 tccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28642222 tccagttcatgttttggatgagatgatcaaaggaacttgt 28642183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28671005 - 28670766
Alignment:
Q  1 acaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaa 100  Q
    ||||||||||||||||||||||||   ||||||||| |||||||  ||||| |||  | ||||| |||| ||||||||||| ||||||||||||||||||    
T  28671005 acaaaagttccacgcatgttctattgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccctacaattgacttaa 28670906  T
Q  101 aaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaat 200  Q
     |||||||||||||||||||| |||||||||||||||||| ||| || ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28670905 caggaatccatgatgatcctgttttgagagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaat 28670806  T
Q  201 tccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    ||||   ||  ||||||||||||||||||| |||||||||    
T  28670805 tccaacacagattttggatgagatgatcaatggaacttgt 28670766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 240
Target Start/End: Complemental strand, 28675093 - 28674910
Alignment:
Q  57 cagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaat 156  Q
    |||||||| ||||  ||||||||| ||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||| || || |||||    
T  28675093 cagtgaatcaaatttaaagcttagcatccctacaattgacttaacaggaatccacgatgatcctcttttgagagatgaagttgtgagaaaagttcaaaat 28674994  T
Q  157 gcaagtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||   ||| |||||||||||||||||||||||||||||    
T  28674993 gcaagtgagaaatggggattctttcaagtgataaatcatggaattccaacacatattttggatgagatgatcaaaggaacttgt 28674910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 28691549 - 28691386
Alignment:
Q  77 ttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggatt 176  Q
    |||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||| ||||||| ||||||||    
T  28691549 ttagtatccctacaattgacctaacaggaatccatgatgatcttgttttgagagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggatt 28691450  T
Q  177 ctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  28691449 ctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgatcaaaggaacttgt 28691386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 28696445 - 28696271
Alignment:
Q  66 aaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgag 165  Q
    |||| ||||||| ||||||||  |||||||| ||| |||||||||| |||||| || ||||| |||||||||||||||| || || ||||||||||||||    
T  28696445 aaattcaaagctaagtatcccaccaattgacctaacaggaatccataatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgag 28696346  T
Q  166 aaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    || ||||||||||||||||||||||||||||||||||||   ||  |||||||||||||||||||||||||||||    
T  28696345 aattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaacttgt 28696271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 28717651 - 28717589
Alignment:
Q  178 tttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  28717651 tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgt 28717589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 28741621 - 28741514
Alignment:
Q  60 tgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgca 159  Q
    ||||| |||| ||||| ||||||||| || |||||| |||  ||||||||||||||||| || ||||||||||  |||||||||| || || ||||| ||    
T  28741621 tgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagttgtgagaaaagttcaaaattca 28741522  T
Q  160 agtgagaa 167  Q
     |||||||    
T  28741521 tgtgagaa 28741514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 28733457 - 28733368
Alignment:
Q  32 aatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctg 121  Q
    ||||| |||||||| ||| | ||| || ||||| |||| ||||| |||||||||||| |||||| |||  ||||||||||||||||||||    
T  28733457 aatctaatatcaacgatgtttcagtcaatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctg 28733368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 41238469 - 41238545
Alignment:
Q  164 agaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaacttgt 240  Q
    |||| |||||||| || ||||| || |||||||| |||||| ||||||||||||||||||||||||| |||| ||||    
T  41238469 agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgt 41238545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 33769169 - 33769111
Alignment:
Q  169 tggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat 227  Q
    |||||||| |||||||| || |||||||| ||||| |||  ||||||||||||||||||    
T  33769169 tggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgat 33769111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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