View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_low_18 (Length: 238)
Name: NF15813_low_18
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 11949066 - 11949204
Alignment:
| Q |
29 |
ctcaagctttatgttgttcttaaatgaagttaaatgatttgataaagaactatatgcgttggtaataccattttaggaaagactttttaaaaggctttca |
128 |
Q |
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| T |
11949066 |
ctcaagctttatgttgttcttaaatgaagttaaatgatttgataaagaactatatgcgttggtaataacattttaggaaagactttttaaaaggctttca |
11949165 |
T |
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| Q |
129 |
tgttcttgatacacacaaagattttaagatggttaacac |
167 |
Q |
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| T |
11949166 |
tgttcttgatacacacaaagattttaagatggttaacac |
11949204 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 11949258 - 11949329
Alignment:
| Q |
167 |
cggtctcttgattatacatctaactttgttcgagtaaagatcttcaatgttgaaaacctaacattaaaggtt |
238 |
Q |
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| T |
11949258 |
cggtctcttgattatacatctaactttgttcgagtaaagatcttcaatgttgaaaatctaacattaaaggtt |
11949329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 39822086 - 39822038
Alignment:
| Q |
29 |
ctcaagctttatgttgttcttaaatgaagttaaatgatttgataaagaa |
77 |
Q |
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| T |
39822086 |
ctcaagttttatgttgttctataatgaagttaaatggtttgataaagaa |
39822038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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