View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15813_low_19 (Length: 221)

Name: NF15813_low_19
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15813_low_19
NF15813_low_19
[»] chr3 (13 HSPs)
chr3 (11-206)||(22628887-22629082)
chr3 (20-206)||(22435075-22435261)
chr3 (21-205)||(22441184-22441371)
chr3 (19-129)||(22366445-22366552)
chr3 (19-152)||(22466452-22466588)
chr3 (20-152)||(22352332-22352467)
chr3 (19-206)||(22633902-22634089)
chr3 (20-68)||(22356557-22356605)
chr3 (105-152)||(22457017-22457064)
chr3 (105-152)||(22479998-22480045)
chr3 (103-152)||(22356479-22356528)
chr3 (29-68)||(22457092-22457131)
chr3 (29-68)||(22480073-22480112)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 22629082 - 22628887
Alignment:
Q  11 gaagcaaaggaatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctcagtatcagtggtagtcatgattatgaagacaaattggaaagg 110  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||  | ||||||||||| ||||||||||||||||||||||||||    
T  22629082 gaagcaagggaatgatgcaatgaaattactccaaagtatgcgaaaattgctgtccctctatgtcagtggtagtgatgattatgaagacaaattggaaagg 22628983  T
Q  111 ttacattttcaagatggatggtttatgaatttgaaggaactaactatttttaaacttgatagcttgagttacatcgttattgacgaaggtgcattg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||||    
T  22628982 ttacattttcaagatggatggtttatgaatttgaaggaactaactatttttggacttgataacttgagttacatcgttattgacgaaggttcattg 22628887  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 22435261 - 22435075
Alignment:
Q  20 gaatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctcagtatcagtggtagtcatgattatgaagacaaattggaaaggttacatttt 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  ||||  ||||  || ||||||||||||||||||||||||||||||||||    
T  22435261 gaatgatgcaatgaaattacttcaaagtatgccaaacttgttgtccctccatatctctggtgttcctgattatgaagacaaattggaaaggttacatttt 22435162  T
Q  120 caagatggatggtttatgaatttgaaggaactaactatttttaaacttgatagcttgagttacatcgttattgacgaaggtgcattg 206  Q
     ||||||||||||||||||||||||||||||||  | ||  | |  |   |||||||||| ||||| ||||||||||||||||||||    
T  22435161 gaagatggatggtttatgaatttgaaggaactatatcttcgtgatttctgtagcttgagtaacatccttattgacgaaggtgcattg 22435075  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 22441371 - 22441184
Alignment:
Q  21 aatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctcagtatcag---tggtagtcatgattatgaagacaaattggaaaggttacatt 117  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||  ||||     ||||  | || |||||||||||||||| |||||||||||||    
T  22441371 aatgatgcaatgaaattactcataagtatgccaaacttgttgtccctccatatctcggatggttctgattattatgaagacaaattcgaaaggttacatt 22441272  T
Q  118 ttcaagatggatggtttatgaatttgaaggaactaactatttttaaacttgatagcttgagttacatcgttattgacgaaggtgcatt 205  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||| |  |  |||  ||||| || ||| |||||||||||||||||||    
T  22441271 ttcaagttggatggtttacgaatttgaaggaactaattatttttcatttcaataaattgagatatatccttattgacgaaggtgcatt 22441184  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 22366552 - 22366445
Alignment:
Q  19 ggaatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctcagtatcagtggtagtcatgattatgaagacaaattggaaaggttacattt 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||  ||||  |||| |   | |||||||||||||||||||||||||||||||    
T  22366552 ggaacgatgcaatgaaattactccaaagtatgccaaacttgttgtccctccatatctctggtgg---taattatgaagacaaattggaaaggttacattt 22366456  T
Q  119 tcaagatggat 129  Q
    ||||| |||||    
T  22366455 tcaagttggat 22366445  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 22466588 - 22466452
Alignment:
Q  19 ggaatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctcagtatcagtgg---tagtcatgattatgaagacaaattggaaaggttaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| || ||| |||   | |||   |||||||||||||||| |||||  ||||    
T  22466588 ggaatgatgcaatgaaattactccaaagtatgccaaacttgttgctcctctgtttcactggcgatggtcgccattatgaagacaaatttgaaagtataca 22466489  T
Q  116 ttttcaagatggatggtttatgaatttgaaggaacta 152  Q
    |||||| ||||| ||||||| ||||||||||||||||    
T  22466488 ttttcaggatgggtggtttaagaatttgaaggaacta 22466452  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 22352467 - 22352332
Alignment:
Q  20 gaatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctcagtat---cagtggtagtcatgattatgaagacaaattggaaaggttacat 116  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | |     ||||| ||||   |||||||||||| || ||||| ||||||    
T  22352467 gaatgatgcaatgaaattactccaaagtatgccaaatttgttgtccctcacttttgctggtggtggtcaccgttatgaagacaatttcgaaagtttacat 22352368  T
Q  117 tttcaagatggatggtttatgaatttgaaggaacta 152  Q
    |||||||| || | |||||||||||||||| |||||    
T  22352367 tttcaagaagggttgtttatgaatttgaagaaacta 22352332  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 22634089 - 22633902
Alignment:
Q  19 ggaatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctcagtatcagtggtagtcatgattatgaagacaaattggaaaggttacattt 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    |||   |||  |  |  |  |||| ||| |||||| |||||||||||    
T  22634089 ggaatgatgcaatgaaattactcaaaagtatgccaaacttgttgtcccttgaaatctccggtgattttagtgttgaaaacacattggagaggttacattt 22633990  T
Q  119 tcaagatggatggtttatgaatttgaaggaactaactatttttaaacttgatagcttgagttacatcgttattgacgaaggtgcattg 206  Q
    | |||||||||||||||||||||||||| | ||  |||||||| |  |   ||  |||||| ||||| ||||||||||||||||||||    
T  22633989 tgaagatggatggtttatgaatttgaagaacctggctatttttgatttctttaagttgagtcacatccttattgacgaaggtgcattg 22633902  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 22356605 - 22356557
Alignment:
Q  20 gaatgatgcaatgaaattactccaaagtatgccaaacttgttgtccctc 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22356605 gaatgatgcaatgaaattactccaaagtatgccaaatttgttgtccctc 22356557  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 22457064 - 22457017
Alignment:
Q  105 gaaaggttacattttcaagatggatggtttatgaatttgaaggaacta 152  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  22457064 gaaaggttacattttcaagatggatggtttgagaatttgaagcaacta 22457017  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 22480045 - 22479998
Alignment:
Q  105 gaaaggttacattttcaagatggatggtttatgaatttgaaggaacta 152  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  22480045 gaaaggttacattttcaagatggatggtttgagaatttgaagcaacta 22479998  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 22356528 - 22356479
Alignment:
Q  103 tggaaaggttacattttcaagatggatggtttatgaatttgaaggaacta 152  Q
    ||||||| |||||||| |||||||||||||||| ||| ||||||||||||    
T  22356528 tggaaagtttacatttccaagatggatggtttaagaacttgaaggaacta 22356479  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 22457131 - 22457092
Alignment:
Q  29 aatgaaattactccaaagtatgccaaacttgttgtccctc 68  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  22457131 aatgaaattactcaaaagtatgccaaacttgttgaccctc 22457092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 22480112 - 22480073
Alignment:
Q  29 aatgaaattactccaaagtatgccaaacttgttgtccctc 68  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  22480112 aatgaaattactcaaaagtatgccaaacttgttgaccctc 22480073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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