View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_low_3 (Length: 683)
Name: NF15813_low_3
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 356 - 661
Target Start/End: Complemental strand, 3506216 - 3505911
Alignment:
| Q |
356 |
ccagaaattaaattgacaagtacacaccagcaactagttatatagaattaaaccacaannnnnnngaatattaatgaagaattgaaatcaaaggagtata |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3506216 |
ccagaaattaaattgacaagtacacaccagcaactagttatatagaattaaaccacaatttttttgaatattaatgaagaattgaaatcaaaggagtata |
3506117 |
T |
|
| Q |
456 |
ccgattttcgaagagaggtggaagctaatggatacgtggtttggagcagagatttgagagatgacacagcgtcttcgaatttctgcttcttccccaattg |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3506116 |
ccgattttcgaagagaggtggaagctaatggatacgtggtttggagcagagatttgagagatgacacagcgtcttcgaatttctgcttcttccccaattg |
3506017 |
T |
|
| Q |
556 |
tttctgcaattcctccaattcttgtttcaccaaattttctgattccattttgtttctgttcttgcaatgatttttcactcagattttggaaattgagaaa |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3506016 |
tttctgcaattcctccaattcttgtttcaccaaattttctgattccattttgtttctgttcttgcaatgatttttcactcagattttggaaattgagaaa |
3505917 |
T |
|
| Q |
656 |
cccttt |
661 |
Q |
| |
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|||||| |
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| T |
3505916 |
cccttt |
3505911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 3506552 - 3506281
Alignment:
| Q |
18 |
ccaatgtcatgtatctgtcagttcttcatacgcataaaactgtttcaccccgtcccagttactcaattgttacattctattactataatttcctaaaatt |
117 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
3506552 |
ccaacgtcatgtatctgtcagttcttcgtacgcataaaactgtttcatcccgtcccagcgactcaattgttacattcaattactataatttcctaaaatt |
3506453 |
T |
|
| Q |
118 |
atcacaggagtccatgcatgtatccaagcttcataactgtaaacagtttcacaccaagctagctactcaattagccgctcgacgttggaaatatccacaa |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3506452 |
atcacaggagtccatgtatgtatccaagcttcataactgtaaacagtttcacaccaagctagctactcaattagccgctcgacgttggaaatatccacaa |
3506353 |
T |
|
| Q |
218 |
gtatcgttaaccatgtgtgctaactcttcataatacatccaattatataacaaattaaaaactatagatcaatc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
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| T |
3506352 |
gtatcgttaaccatgtgtgctaactcttcataatacatccaattatataac--agtataaactatagatcaatc |
3506281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 356 - 569
Target Start/End: Complemental strand, 33296739 - 33296526
Alignment:
| Q |
356 |
ccagaaattaaattgacaagtacacaccagcaactagttatatagaattaaaccacaannnnnnngaatattaatgaagaattgaaatcaaaggagtata |
455 |
Q |
| |
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|||||||||||||| | || |||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33296739 |
ccagaaattaaattaataaatacacaccagcaactaattttatagaattataccacaattttgttgaatattaatgaagaattgaaatcaaaggagtata |
33296640 |
T |
|
| Q |
456 |
ccgattttcgaagagaggtggaagctaatggatacgtggtttggagcagagatttgagagatgacacagcgtcttcgaatttctgcttcttccccaattg |
555 |
Q |
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|| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| | ||||| |
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| T |
33296639 |
ccaattttcaaagagaggtggaagctgatggatacgtggtttggagcagagatttgagagatgaaacagtgtcttcgaatttatgcttcttctctaattg |
33296540 |
T |
|
| Q |
556 |
tttctgcaattcct |
569 |
Q |
| |
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|||||||||||||| |
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| T |
33296539 |
tttctgcaattcct |
33296526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 656
Target Start/End: Complemental strand, 33296452 - 33296416
Alignment:
| Q |
620 |
caatgatttttcactcagattttggaaattgagaaac |
656 |
Q |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
33296452 |
caatgatttttcacttagattttggaaattgagaaac |
33296416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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