View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_low_4 (Length: 656)
Name: NF15813_low_4
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Complemental strand, 1530151 - 1529501
Alignment:
| Q |
1 |
actgtttattctactgttttatgtcatatgtataggaaaataatttattcttatctctt----------cttaatctcactaattttgcttaatatagcc |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
1530151 |
actgtttattctactgttttatgtcatatgtataggaaaataatttattcttatctcttttaatgtcttcttgatctcactaattttgcttaatatagcc |
1530052 |
T |
|
| Q |
91 |
attgcggagagagcaataacccgaatgataaaaacaaatacaacggtaagtaacaggtggtaacacaagtgtgaacaaaacacatatagcacatgcaatg |
190 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530051 |
attgcggagagagcaataacccaaatgataaaaacaaatacaacggtaagtaacaggtggtaacacaagtgtgaacaaaacacatatagcacatgcaatg |
1529952 |
T |
|
| Q |
191 |
accaagataatcacatattcccttcgtccttgtatgtaagcaccatttgcctataataaaagtgcttaaatataaagacggatggagtatttcagcagac |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1529951 |
accaagataatcacatattcccttcgtccttgtatgtaagcaccatttgcctataataaaagtgcttaaatataaagacggatggagtatttcagtagac |
1529852 |
T |
|
| Q |
291 |
caacatgtgggcattgtaagatggtagtgagaataacgatgagaaaagtaataacagtgaaaactaacaacaatacaaagttgtcaccaaaacatgttat |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1529851 |
caacatgtgggcattgtaagatggtagtgagaataacgatgagaaaagtaataacagtgaaaactaacaacaatacaaagttgtcaccaaaacatgttat |
1529752 |
T |
|
| Q |
391 |
ctcaaaataaacaaaagccatgagtgtccaaaaaagtcgaataattttgttaaaaacttgtgtggacctctcatagtgtgcttatttgttactcccttgg |
490 |
Q |
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| T |
1529751 |
ctcaaaataaacaaaagccatgagtgtccaaaaaagtcgaataattttgttaaaaacttgtgtggacctctcatagtgtgcttatttgttactcccttgg |
1529652 |
T |
|
| Q |
491 |
atcactctttgaattgggtccgtttagctcattacatagatgcatataaattattggcttataatcatctttgagctacaatgaatctaaatttgttttt |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1529651 |
atcactctttgaattgggtccgtttagctcattacatagatgcatataaattattggcttataatcatctttgagctacaatgaatctaaatttgttttt |
1529552 |
T |
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| Q |
591 |
gagtgtagttgttagttaatatgtcattggatcttttattataattgtatt |
641 |
Q |
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| T |
1529551 |
gagtgtagttgttagttaatatgtcattggatcttttattataattgtatt |
1529501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 1531074 - 1531025
Alignment:
| Q |
315 |
tagtgagaataacgatgagaaaagtaataacagtgaaaactaacaacaat |
364 |
Q |
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| T |
1531074 |
tagtgagaataatgatgagaaaagtgataactgtgaaaactaacaacaat |
1531025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 1526650 - 1526614
Alignment:
| Q |
328 |
gatgagaaaagtaataacagtgaaaactaacaacaat |
364 |
Q |
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| T |
1526650 |
gatgagaaaagtgataactgtgaaaactaacaacaat |
1526614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 30081099 - 30081162
Alignment:
| Q |
4 |
gtttattctactgttttatgtcatatgtataggaaaataatttattcttatctcttcttaatctc |
68 |
Q |
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| T |
30081099 |
gtttattttactgttttatgtcataagtatagaaaaatagtttattctgatctctt-ttaatctc |
30081162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 26412096 - 26412033
Alignment:
| Q |
365 |
acaaagttgtcaccaaaacatgttatctcaaaataaacaaaagccatgagtgtccaaaaaagtc |
428 |
Q |
| |
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| T |
26412096 |
acaaagttgtcagcaaaacttgttatctctgtataaacaaaagccatgagtgccccaaaaagtc |
26412033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 16725079 - 16725018
Alignment:
| Q |
223 |
tatgtaagcaccatttgcctataataaaag--tgcttaaatataaagacggatggagtattt |
282 |
Q |
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|||||||||| ||||||||| ||||||||| |||||| ||||||||||| | ||||||||| |
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| T |
16725079 |
tatgtaagcatcatttgcctctaataaaagggtgcttacatataaagacgaagggagtattt |
16725018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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