View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_low_5 (Length: 595)
Name: NF15813_low_5
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 375 - 580
Target Start/End: Original strand, 15758159 - 15758360
Alignment:
| Q |
375 |
caacaaattcatgtttccttccatctgttctcgtttctcgccatttcttgctgatacgttctgtttcagtatttacatactacgtacgtactgtaatcat |
474 |
Q |
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| T |
15758159 |
caacaaattcatgtttcctccgatatgttttcgtttctcgccatttcctgttgatacgttctgtttcagtatttacatactacg----tactgtaatcat |
15758254 |
T |
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| Q |
475 |
atattattcctagcctatggtttatttggttttgctattttcctttattgcattttaatttagaaccgaagatagatttggtgaggtgtcatttgtgagt |
574 |
Q |
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| T |
15758255 |
atattattcctagcctatggtttatttggttttgctattttcctttattgcattttaatttagaaccgacgatagatttggtgaggtgtcatttgtgagt |
15758354 |
T |
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| Q |
575 |
ggatag |
580 |
Q |
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|||||| |
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| T |
15758355 |
ggatag |
15758360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 38 - 313
Target Start/End: Original strand, 15756676 - 15756953
Alignment:
| Q |
38 |
acttttttgatgatttgg-cacattttttacgatgtggcttacatatattggttaagtaacattttactcatttttacaattnnnnnnnttgcattatat |
136 |
Q |
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| T |
15756676 |
actttcttgatgatttgggcacatttttgatgatgtggcgtacatatattggttaagtaacatttgactcatttttacaat-aaaaaaattgcattatat |
15756774 |
T |
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| Q |
137 |
caaaatataattgtttaannnnnnnctcatattttgtagacataaaatattttaattaaaacatcaaaccctaaaatgtatgccctt-tttaatcttcat |
235 |
Q |
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| T |
15756775 |
caaaatataattgtttaacttttt-ctcatattttatagacataaaatattttaattaaaacatcaaaccctaaaaagtattcccttctttaatcttcat |
15756873 |
T |
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| Q |
236 |
cttcgacaccaaattcctaatttgccaacaatttatcactc--aaaaattcatcaaactcatattttcattaattcgtct |
313 |
Q |
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| T |
15756874 |
cttcaacaccaaatttctaatttgccaacaattcatcactcataaaaattaatcaaactcatatttacattaatttgtct |
15756953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 15756544 - 15756624
Alignment:
| Q |
21 |
aaaataccatggaagctacttttttgatgatttggcacattttttacgatgtggcttacatatattggttaagtaacattt |
101 |
Q |
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| T |
15756544 |
aaaataccattggagttacttttttgatgatttggcacattttttacgatgtggcgtacatatattggttaagtaacattt |
15756624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 532
Target Start/End: Complemental strand, 4257946 - 4257903
Alignment:
| Q |
489 |
ctatggtttatttggttttgctattttcctttattgcattttaa |
532 |
Q |
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| T |
4257946 |
ctatggtttattttgctttgctattttcctttattgcattttaa |
4257903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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