View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15813_low_6 (Length: 568)
Name: NF15813_low_6
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 126 - 552
Target Start/End: Complemental strand, 158592 - 158166
Alignment:
| Q |
126 |
aaaaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacac |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158592 |
aaaaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacac |
158493 |
T |
|
| Q |
226 |
acccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttatgtcatgctaaaggtagaaaca |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
158492 |
acccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttgtgtcatgctaaaggtagaaaca |
158393 |
T |
|
| Q |
326 |
cccaatcacaatcaactccaccctacaaagagtgacataaggaccctgttattaactcaannnnnnnnnnnnggaaagccnnnnnnntccactttattat |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
158392 |
cccaatcacaatcaactccaccctacaaagagtgacataaggaccctgttattaactcaatttttattttttggaaagccaaaaaaatccactttattat |
158293 |
T |
|
| Q |
426 |
tactcaccaactccttgattttattccttttatttcttcctcccaaccttctaacattgaaggttgtaataatcattgattgcaatttagtctctccctt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158292 |
tactcaccaactccttgattttattccttttatttcttcctcccaaccttctaacattgaaggttgtaataatcattgattgcaatttagtctctccctt |
158193 |
T |
|
| Q |
526 |
gctaccttcaatcctacatcaccttct |
552 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
158192 |
gctaccttcaatcctacatcaccttct |
158166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University