View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15813_low_9 (Length: 342)
Name: NF15813_low_9
Description: NF15813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15813_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 3948252 - 3948563
Alignment:
| Q |
13 |
aatatgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctcatat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3948252 |
aatatgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctcatat |
3948351 |
T |
|
| Q |
113 |
ttatttgaaggagcaagtaaaagagaatgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattatttgga |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3948352 |
ttatttgaaggagcaagtaaaagaaaatgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattgtttgga |
3948451 |
T |
|
| Q |
213 |
tgtcaaagaaagcttgaaaccctacatttaggatactgtttcttgaaaattttccttcatgttttaagaatatgatataaggctacaatatctagccata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3948452 |
tgtcaaagaaagcttgaaaccctacatttaggatactgtttcatgaaaattttcctttatgttttaagaatatgatataaggctacaatatctagccata |
3948551 |
T |
|
| Q |
313 |
agatgttgccat |
324 |
Q |
| |
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|||||||||||| |
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| T |
3948552 |
agatgttgccat |
3948563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 111 - 324
Target Start/End: Complemental strand, 3804611 - 3804400
Alignment:
| Q |
111 |
atttatttgaaggagcaagtaaaagagaatgtgacatcggagaaaatgacagtactggatttacg-atacacacaagttaatgtaatgcctgcattattt |
209 |
Q |
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||||| |||||||| ||||||| |||||| |||||||| ||||||||||||| ||| |||||||| |||||||| ||| ||||| |||||||||| ||| |
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| T |
3804611 |
atttacttgaaggatcaagtaagagagaacgtgacatcagagaaaatgacagaactagatttacggatacacactagtcaatgttttgcctgcattgttt |
3804512 |
T |
|
| Q |
210 |
ggatgtcaaagaaagcttgaaaccctacatttaggatactgtttcttgaaaattttccttcatgttttaagaatatgatataaggctacaatatctagcc |
309 |
Q |
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|||||||||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||| || ||||| ||||| ||||||| | |
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| T |
3804511 |
ggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcatgaaaattttccttcatg-tttaagaatctg--ataagactacagtatctagac |
3804415 |
T |
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| Q |
310 |
ataagatgttgccat |
324 |
Q |
| |
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|| ||||||||||| |
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| T |
3804414 |
atttgatgttgccat |
3804400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 140 - 307
Target Start/End: Complemental strand, 4016932 - 4016766
Alignment:
| Q |
140 |
tgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattatttggatgtcaaagaaagcttgaaaccctacat |
239 |
Q |
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||||||||| | ||| ||||||| ||||||||||||||||| ||||| ||| | ||||||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
4016932 |
tgtgacatcagtgaatatgacagagctggatttacgatacactcaagtgaatacattgcctgcatcatttggatgtcaaagcaagcttgaaatcctacat |
4016833 |
T |
|
| Q |
240 |
ttaggatactgtttc-ttgaaaattttccttcatgttttaagaatatgatataaggctacaatatctag |
307 |
Q |
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|||||| | |||| | ||||||||||||||||||||||||||||| | ||| || ||||||||||||| |
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| T |
4016832 |
ttaggaaattgttccattgaaaattttccttcatgttttaagaatctaataaaa--ctacaatatctag |
4016766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 4019416 - 4019503
Alignment:
| Q |
17 |
tgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatcta |
104 |
Q |
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|||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4019416 |
tgcaccttggtggagctatacactctttgatgttcaacaaatgcattttcataactcttcatttgatatcttacatctgcaggatcta |
4019503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 3805693 - 3805779
Alignment:
| Q |
19 |
caccttggtggagctatacattct-ttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatcta |
104 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3805693 |
caccttgatggagttatacattcccttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatcta |
3805779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 322
Target Start/End: Original strand, 3965381 - 3965562
Alignment:
| Q |
140 |
tgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattatttggatgtcaaagaaagcttgaaaccctacat |
239 |
Q |
| |
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||||||||| ||||| |||| || ||||||||| |||||||||| | |||| | ||||||||| ||||||| |||||| |||||||||| ||||||| |
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| T |
3965381 |
tgtgacatcagagaatatgatagagttggatttacaatacacacaaatcaatgcattgcctgcatcatttggacgtcaaaccaagcttgaaatcctacat |
3965480 |
T |
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| Q |
240 |
ttaggatactgtttc-ttgaaaattttccttcatgttttaagaatatgatataaggctacaatatctagccataagatgttgcc |
322 |
Q |
| |
|
|||||| |||||| | |||||| ||||||||||||||||||||| || ||||| || |||||||||| |||||||| ||||| |
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| T |
3965481 |
ttaggaaactgttccattgaaagatttccttcatgttttaagaatttg--ataagactgcaatatctagacataagatattgcc |
3965562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3962659 - 3962569
Alignment:
| Q |
17 |
tgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacct |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
3962659 |
tgcaccttggtggagctataccctctttggagttcaacaaatgcattatcataactcttgttttgatatcttacatctgtaggatctacct |
3962569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 4220677 - 4220733
Alignment:
| Q |
52 |
aacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctc |
108 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| ||||| || |||||||||||| |
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|
| T |
4220677 |
aacaaatgcattttcataactcttcttttgatatcgtacatttgtaggatctacctc |
4220733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 4011651 - 4011713
Alignment:
| Q |
49 |
ttcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctcata |
111 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| || ||||| || |||||||||| |||| |
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|
| T |
4011651 |
ttcagcaaatgcattttcataactcttcttttgatgtcgtacatttgtaggatctaccccata |
4011713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 3811870 - 3811919
Alignment:
| Q |
56 |
aatgcattttcataacccttcatttgatatcttacatctgcaggatctac |
105 |
Q |
| |
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|||||||||||||||| |||| |||||| || |||||||| ||||||||| |
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| T |
3811870 |
aatgcattttcataactcttcttttgatgtcgtacatctgtaggatctac |
3811919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 13399013 - 13399057
Alignment:
| Q |
49 |
ttcaacaaatgcattttcataacccttcatttgatatcttacatc |
93 |
Q |
| |
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||||||||||||||||||||||| |||| |||||| || |||||| |
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|
| T |
13399013 |
ttcaacaaatgcattttcataactcttcttttgatgtcgtacatc |
13399057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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