View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_high_1 (Length: 873)
Name: NF15814_high_1
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 715; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 1 - 855
Target Start/End: Original strand, 2653446 - 2654297
Alignment:
| Q |
1 |
agggagtagcaaacaaaagttatattgcaatttgaaatgaattaattttcatttaacagaaaatttaaagtcacaaattgaagttacttagtctgttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2653446 |
agggagtagcaaacaaaagttatattgcaatttgaaatgaattaattttcatttaacagaaaatttaaagtcacaaattgaagttacttagtctgttgta |
2653545 |
T |
|
| Q |
101 |
atcattgattacatatccacaaaaaataaattgataaaatagaaataacatcaatctagctattccaattgagttataaatgtttactgcttacataatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2653546 |
atcattgattacatatccacaaaaaataaattgataaaatagaaataacatcaatctagctattccaattgagttataaatgtttactgcttacataatt |
2653645 |
T |
|
| Q |
201 |
aaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaatttgaagcaacattgagatatag--atatatgcacaagcaacatacataatctt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| |
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| T |
2653646 |
aaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaatttgaagcaacattgagatatagatatatatgcacaagcaatatacagaatctt |
2653745 |
T |
|
| Q |
299 |
tgtttaaataccgcctatctatcattttctgcagatttcaaacacagttttatgtcttaaaaatttacagattccgcaaggaaagtgaccaaatatataa |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2653746 |
tgtttaaataccgcctatctatcattttctgcagatttcaaacaccgttttatgtcttaaaaatttacagattccgcaaggaaagtgaccaa----ataa |
2653841 |
T |
|
| Q |
399 |
taaacatactgaagttcccaacttttggacttgaattcctcattgtggaagacagaaaaagcttgtacaaagggtccttaatttgtttttattatatctt |
498 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
2653842 |
taaacatactgaagtttccaacttttggacttgaattcctcattgtggaagacaaaaaaatcttgtacaaagggtccttaatttgtttttattgtatctt |
2653941 |
T |
|
| Q |
499 |
tctt-ttataaatcagcggaaatgagattttgctgagctcaattaaattagggaaaaggtgcagtttctctcattaactcttagtcattagtatgtttgt |
597 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2653942 |
tcttattataaatctgcggaaatgagattttgctgagctcaattaaattaggaaaaagatgcagtttctctcattaactcttagtcattagtatgtacgt |
2654041 |
T |
|
| Q |
598 |
tgcaatgtttgctataagatgcacaaatttcatactgttttcctcatatcttgcacaaaacaatatgaacataacagaattttatcatggatgtggtact |
697 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
2654042 |
tgcaatgtttgctataagatgcacaaatttcatactgttttcctcatatcttgcacaaaacaatatgaattgaacataactttatcatggatgtggtact |
2654141 |
T |
|
| Q |
698 |
taatgaaggttatacgatcgctttgagtggtatcatggtggtcactatgtctatataaagaattaccacgtaataggaacgtcaaaagaaccgttggcaa |
797 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
2654142 |
taatgaaggt--tacgatcgctttgagtggtatcacggtggtcactatgtctatataaagaattaccacgccataggaacgtcaaaagaaccgctggcag |
2654239 |
T |
|
| Q |
798 |
acatcaaaattctaattatgatttcgaaaatacaactatttaccctctaatgcagtgc |
855 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
2654240 |
acatcaaaattctaattatgatttcgaaaatacaagtagttaccctctaatgcagtgc |
2654297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 763
Target Start/End: Complemental strand, 25608874 - 25608805
Alignment:
| Q |
692 |
ggtacttaatgaaggttatacgatcgctttgagtggtatcatggtggtcactatgtctatataaagaattac |
763 |
Q |
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||||||||||||||||||| || |||||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
25608874 |
ggtacttaatgaaggttat--gaaagctttgagtgatatcgcggtggtcactatgtgtatataaagaattac |
25608805 |
T |
|
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