View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_high_10 (Length: 426)
Name: NF15814_high_10
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 14143287 - 14142897
Alignment:
| Q |
18 |
gttccagctttgaatcaataaaaagatgttgttccagcctcatcattattctgcattccnnnnnnnnnnnnnnntaaagtgaaattaaggaaactaattc |
117 |
Q |
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| T |
14143287 |
gttccagctttgaatcaataaaaagatgttgttccagcctcatcattattctgcattccttttcaaaa-------aaaatgaaattaaggaaactaattc |
14143195 |
T |
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| Q |
118 |
ttgttcctttcttgctagtaaaaatatgacaataatttaacaatctcctaacataagtattaaatttgacaataat---ttatcatgacaattgacaata |
214 |
Q |
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| T |
14143194 |
atgttcctttcttgctagtaaaaatatgacaataatttaacaatcacctaacataagtataaaatttgacaataataatttatcatgacaattgacaata |
14143095 |
T |
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| Q |
215 |
atttcggttaggataaagtagatgggaacaacttttataaatgatatataaggagataggaacattgacaggtgtgggcgttacttattcaatgcgtatg |
314 |
Q |
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| T |
14143094 |
atttcggttaggataaagtagatgggaacaacttttataaatga-atataaggagataggaacattgacaggtgcgggcgttacttattcaatgcgtatg |
14142996 |
T |
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| Q |
315 |
tgaaacatatgcttttcattttcaaatatgtaaactaagtgtctttggcacgttatgatcacctttattttatttttcttaagctaggatcactttttt |
413 |
Q |
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| T |
14142995 |
tgaaacatatgcttttcattttcaaatatgtaaactaagtgtctttggcacgttaggatcacctttattttttatttttgaagcgaggatcactttttt |
14142897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 14146724 - 14146334
Alignment:
| Q |
18 |
gttccagctttgaatcaataaaaagatgttgttccagcctcatcattattctgcattccnnnnnnnnnnnnnnntaaagtgaaattaaggaaactaattc |
117 |
Q |
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| T |
14146724 |
gttccagctttgaatcaataaaaagatgttgttccagcctcatcattattctgcattccttttcaaaa-------aaaatgaaattaaggaaactaattc |
14146632 |
T |
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| Q |
118 |
ttgttcctttcttgctagtaaaaatatgacaataatttaacaatctcctaacataagtattaaatttgacaataat---ttatcatgacaattgacaata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
14146631 |
atgttcctttcttgctagtaaaaatatgacaataatttaacaatcacctaacataagtataaaatttgacaataataatttatcatgacaattgacaata |
14146532 |
T |
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| Q |
215 |
atttcggttaggataaagtagatgggaacaacttttataaatgatatataaggagataggaacattgacaggtgtgggcgttacttattcaatgcgtatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14146531 |
atttcggttaggataaagtagatgggaacaacttttataaatga-atataaggagataggaacattgacaggtgcgggcgttacttattcaatgcgtatg |
14146433 |
T |
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| Q |
315 |
tgaaacatatgcttttcattttcaaatatgtaaactaagtgtctttggcacgttatgatcacctttattttatttttcttaagctaggatcactttttt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| | |||| |||||||||||||| |
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| T |
14146432 |
tgaaacatatgcttttcattttcaaatatgtaaactaagtgtctttggcacgttaggatcacctttattttttatttttgaagcgaggatcactttttt |
14146334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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