View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15814_high_16 (Length: 223)
Name: NF15814_high_16
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 50393327 - 50393521
Alignment:
| Q |
20 |
actggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50393327 |
actggttcacttgtgacttgtgttaagaatttccctgaatctcgcggagcggttttgggaattcttaaaggttatgttggtcttagtggtgcaataatca |
50393426 |
T |
|
| Q |
120 |
cacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttcttttgattttcttcga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50393427 |
cacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttcttttgcttttcttcga |
50393521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 50384908 - 50385102
Alignment:
| Q |
20 |
actggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
50384908 |
actggttcacttgtgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtctcagtggtgcaatcatca |
50385007 |
T |
|
| Q |
120 |
cacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttcttttgattttcttcga |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
50385008 |
cacagctttactctgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgctatttcgtttgcttttcttcga |
50385102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 50390056 - 50390244
Alignment:
| Q |
23 |
ggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatcacac |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||||| ||||| ||| |||||||||||||||| || ||||||| |
|
|
| T |
50390056 |
ggttcacttgttacttgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaaggatatcttggtcttagtggtgctatcatcacac |
50390155 |
T |
|
| Q |
123 |
agctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttcttttgattttctt |
211 |
Q |
| |
|
| ||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| || | ||||||| |
|
|
| T |
50390156 |
aactttactctgctatttattataatgactcaaaggctttgattttgcttataggttggcttcctgccgctatttcattcgcttttctt |
50390244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 50406940 - 50407134
Alignment:
| Q |
20 |
actggttcacttgtgacttgtgttaagaatttccctgaatctcgtggcgcggttttgggaattcttaaaggctatgttggtcttagtggtgcaataatca |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| ||||||| | || ||||| ||| | ||||| |||||||||||||||||||| || |||| |
|
|
| T |
50406940 |
actggttcacttgttacttgtgttaagaatttccccgaaactcgtggtgttgtgttggggattttaaaaggttatgttggtcttagtggtgctattatca |
50407039 |
T |
|
| Q |
120 |
cacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttcttttgattttcttcga |
214 |
Q |
| |
|
|||| ||||| ||||||||||| | ||||||| |||| |||||||||||| |||| | ||||||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
50407040 |
cacaactttattctgctatttattttgatgacccaaaagctttgattttgcttattgcttggcttccagctgcaatttcctttctttttcttcga |
50407134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 24223903 - 24224041
Alignment:
| Q |
77 |
ggaattcttaaaggctatgttggtcttagtggtgcaataatcacacagctttactctgctatttactatgatgacacaaaggctttgattttgtttatag |
176 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
24223903 |
ggaattcttaaatgttatgttggtcttagtggtgcaatcatcacacaactttactctgctatttattatgatgacacaaaggctttgattttgttcataa |
24224002 |
T |
|
| Q |
177 |
gttggctt-cctgctgctatttcttttgattttcttcga |
214 |
Q |
| |
|
| |||||| | || |||||||||||||| |||||||||| |
|
|
| T |
24224003 |
gctggcttacatgttgctatttcttttgtttttcttcga |
24224041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University