View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15814_high_2 (Length: 681)

Name: NF15814_high_2
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15814_high_2
NF15814_high_2
[»] chr3 (18 HSPs)
chr3 (230-668)||(8260709-8261155)
chr3 (18-165)||(8260497-8260644)
chr3 (230-428)||(8265675-8265874)
chr3 (230-529)||(8258602-8258915)
chr3 (236-327)||(8350129-8350220)
chr3 (18-84)||(8258407-8258474)
chr3 (103-165)||(8350014-8350076)
chr3 (230-327)||(8352867-8352964)
chr3 (18-75)||(8265484-8265542)
chr3 (106-165)||(8258478-8258537)
chr3 (106-165)||(8265551-8265610)
chr3 (236-307)||(8252975-8253046)
chr3 (91-161)||(8334002-8334073)
chr3 (124-165)||(8352761-8352802)
chr3 (232-304)||(8356436-8356508)
chr3 (110-165)||(8252867-8252922)
chr3 (440-487)||(8265901-8265949)
chr3 (232-304)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 230 - 668
Target Start/End: Original strand, 8260709 - 8261155
Alignment:
Q  230 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 8260808  T
Q  330 gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatatg 429  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260809 gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatatg 8260908  T
Q  430 agatctgataatagtcaaattgcttggtgagcaaggaaaacataaagggaccactttggnnnnnnnnnt--------tcatttgtggctgctttgggcac 521  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |        | ||||||||||||||||  |||    
T  8260909 agatatgataatagtcaaattgcttggtgaccaaggaaaacataaagggaccactttggaaaaaaaaataaaaaaaataatttgtggctgctttgaacac 8261008  T
Q  522 ttgttaattgaaaacaaaatgttgtttcgtttgtctttttcattgcttatttggtgcgtgcaatatggttatgaggaacaagtcaaggtctaagtatgat 621  Q
    |||||||||  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8261009 ttgttaattagaatcaaaatgttgtttcgtttgtctttttcattgcttatttggtgcctgcaatatggttatgaggaacaagtcaaggtctaagtatgat 8261108  T
Q  622 tgaccatcgccaaacaagtttctttaagagagtacatcaagtattat 668  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8261109 tgaccatcgccaaacaattttctttaagagagtacatcaagtattat 8261155  T

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Target: chr3; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 8260497 - 8260644
Alignment:
Q  18 gtctcaaactaaaaatgtaccaaaataaataaataaatgtcgattgctctagtctcttgataagaaagtggatgcagattaatactgcatgactacaaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260497 gtctcaaactaaaaatgtaccaaaataaataaataaatgtcgattgctctagtctcttgataagaaagtggatgcagattaatactgcatgactacaaac 8260596  T
Q  118 gtgagagataagagttaacagggaaataagaaactacaattggagctc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260597 gtgagagataagagttaacagggaaataagaaactacaattggagctc 8260644  T

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Target: chr3; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 230 - 428
Target Start/End: Original strand, 8265675 - 8265874
Alignment:
Q  230 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8265774  T
Q  329 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatat 428  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||    
T  8265775 tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttatagacatcatat 8265874  T

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Target: chr3; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 230 - 529
Target Start/End: Original strand, 8258602 - 8258915
Alignment:
Q  230 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 328  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8258701  T
Q  329 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttatag------ 419  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |   |||||||||||||||||||          
T  8258702 tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttatagagttat 8258801  T
Q  420 ------atatcatatgagatctgataatagtcaaattgcttggtgagcaaggaaaacataaa-gggaccactttggnnnnnnnnnttcatttgtggctgc 512  Q
          |||||||||||||| |||| ||||||||||||||||| || |||| | ||| |||| ||||||||||||          |||||||||||||||    
T  8258802 catttcatatcatatgagatatgatgatagtcaaattgcttggcgaccaagcagaacctaaatgggaccactttg---aaaaaaattcatttgtggctgc 8258898  T
Q  513 tttgggcacttgttaat 529  Q
    ||||| |||||||||||    
T  8258899 tttggacacttgttaat 8258915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
Q  236 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 327  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact 8350220  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 8258407 - 8258474
Alignment:
Q  18 gtctcaaactaaaaat-gtaccaaaataaataaataaatgtcgattgctctagtctcttgataagaaa 84  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8258407 gtctcaaactaaaaaaagtaccaaaataaataaataaatgtcgattgctctagtctcttcataagaaa 8258474  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  103 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 165  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
Q  230 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 327  Q
    |||||||||| |||||||||| |||||||   ||||| | ||||||||| | || || ||||||||||||||||||||||||||||||  ||||||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact 8352964  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8265484 - 8265542
Alignment:
Q  18 gtctcaaactaaaaat-gtaccaaaataaataaataaatgtcgattgctctagtctctt 75  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  8265484 gtctcaaactaaaaaaagtaccaaaataaataaataaatgtcgattgctctagtttctt 8265542  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  106 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 165  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  106 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 165  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  236 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 307  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  91 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 161  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  124 gataagagttaacagggaaataagaaactacaattggagctc 165  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  232 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 304  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  110 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 165  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 8265901 - 8265949
Alignment:
Q  440 atagtcaaattgcttggtgagcaaggaaaacataaa-gggaccactttg 487  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||||||    
T  8265901 atagtcaaattgcttggcgaccaaggagaacataaatgggaccactttg 8265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
Q  232 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 304  Q
    ||||||||||||||||||||||| ||| | ||||  | || |||||| | ||||| | |||||||||||||||    
T  8360609 cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

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