View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_high_3 (Length: 626)
Name: NF15814_high_3
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 12 - 614
Target Start/End: Original strand, 11998482 - 11999077
Alignment:
| Q |
12 |
tcatcatatgagacctacagcgaaatttgagaaagattgttttggagcagcaccgatgtttatgcataatgacgatgttggcgtattttggcctggaagt |
111 |
Q |
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| T |
11998482 |
tcatgatatgagacctacagcgaaattcgagaaagattgttttggagcagcaccgatgtttatgcataatgacgatgttggcatattttggcctggaagt |
11998581 |
T |
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| Q |
112 |
ttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcctcaacaaacatctagtacatctcctgatctta |
211 |
Q |
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| T |
11998582 |
ttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcctcaacaaacatctactacatctcctgatctta |
11998681 |
T |
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| Q |
212 |
ctttgaggctttaatatttttgtatcttaattaaattctaatattagnnnnnnngtggcaataattaaacaactatatttctcatgttcatttttctcta |
311 |
Q |
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| T |
11998682 |
ctttgaggctttaatatttttgtatcttaattaaattctaatattagtttttttgtggcaataa----acaactacatttctcatgttcatt---ctcta |
11998774 |
T |
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| Q |
312 |
tggacatgaaattattaattaactctacttgcattgtacaagtaattagatgtgtatttttagtgacatgtttatctcttatgaaattttcagtattatt |
411 |
Q |
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| T |
11998775 |
tggacatgaaattattgattaactctacttgcattgtacaagtaattagatgtgtatttctagtgacatgtttatctcttttgaaattttcagtattatt |
11998874 |
T |
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| Q |
412 |
tgtttcttatagtttgtgtttcacttcattattaatgtcgtttggttataatccctgaacctcaacctgaatttatatagaagttatgtagttatttcat |
511 |
Q |
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| T |
11998875 |
tgtttcttatagtttgtgtttcacttcattattaatgtcgtttggttataatccctgaacctcaacctgaatttatatagaagttatgtagttatttcat |
11998974 |
T |
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| Q |
512 |
aagataagtatacttttttaattagatttttgcaatgatcaagtttgaatttcgcaaataatttacattaagagtgagtaaatacccaaaatggtccttt |
611 |
Q |
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| T |
11998975 |
aagataagtatacttttttaattagatttttgcaatgatcaagtttgaatttcgcaaataatttacattaagggtgagtaaatacccaaaatggtccttt |
11999074 |
T |
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