View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_high_7 (Length: 474)
Name: NF15814_high_7
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Complemental strand, 32715022 - 32714578
Alignment:
| Q |
13 |
tactataaaggtggttttccgatggagacgattaatgttattatggcttctatcaagacgaagagcactaatctgagatggaacagtgcaagggcttatt |
112 |
Q |
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| T |
32715022 |
tactaaaaaggtggttttccgatggagacgattaatgttattatggcttctatcaagacgaagagcactaatctgagatggaacagtgcaagggcttatt |
32714923 |
T |
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| Q |
113 |
tctattccccaaagaaaggtttgaggcaaggagatcccatttcacctactattgtaacttcattgtctcatcttatttgtgatgtggtgaataaagggga |
212 |
Q |
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| T |
32714922 |
tctattccccaaagaaaggtttgaggcaaggagatcccatttcacctactattgtaacttcattgtctcatcttatttgtgatgcggtgaataaagggga |
32714823 |
T |
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| Q |
213 |
ttggctagctaggaaagcaggaagaaatggtcctatgatttatcgcatctgatgtttgcagatgatttgttacttttcgaacaggctaaagggcaacaaa |
312 |
Q |
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| T |
32714822 |
ttgactagctaggaaagcaggaagaaatggtcctatga--tatcgcatctgatgtttgcagatgatttgttacttttcgaacaggctacagggcaacaaa |
32714725 |
T |
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| Q |
313 |
tgaggtgtgtgatgcaagttttgaatcaattctgtcttatttcaagccaaaaggatagcaaagaaaaaaccagannnnnnnnncaagaactgtggatcgc |
412 |
Q |
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| T |
32714724 |
tgaggtgtgtgatgcaagttttgaatcaattctgtcttatttcaggccaataggatagcaaagaaaaaaccagatttttttttcaagaactgtggatcgc |
32714625 |
T |
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| Q |
413 |
aaaactcgaaataagttgactaatatttcaggtttcaaggaagcaaa |
459 |
Q |
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| T |
32714624 |
aaaactcgaaataagttgactaatatttcaggtttcaaggaagcaaa |
32714578 |
T |
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