View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_low_11 (Length: 412)
Name: NF15814_low_11
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 394
Target Start/End: Complemental strand, 25146784 - 25146396
Alignment:
| Q |
6 |
agtgagaagaagatatgcattagtggaggtgatgacggaagcaatattccattcattttttggctatgatgactacccaattataatggtaacatttaat |
105 |
Q |
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| T |
25146784 |
agtgagaaaaagatatgcattagtggaggtgatgacggaagcaatattccattcattttttggctatgatgactacccaattataatggtaacatttaat |
25146685 |
T |
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| Q |
106 |
ctaaggcttgtctttctctagatgatgtttagtaattagctgcaaagtcaggtaacataatgaaagtctgggctcaaagaaacttaaaatatggaaaggc |
205 |
Q |
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| T |
25146684 |
ctaaggcttgtctttctctagatgatgtttagtaattagctgcaaagtcaggtaacataatgaaagtctgggctcaaagaaacttaaaatatggaaaagc |
25146585 |
T |
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| Q |
206 |
agattgtttccaatacagatgttcacccgaaaaaagttcaaaacctagtgatcttttctttcgtgcagtaacttccaatctgctaaacgtaataggaatc |
305 |
Q |
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| T |
25146584 |
agattgtttccgatacagatgttcacccgaaaaaagttcaaaacctagtgatcttttctttcgtgcagtaacttccaatctgctaaacgtaataggaatc |
25146485 |
T |
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| Q |
306 |
gtaatatgttgtctagagaaggattgattttaggagagacaagttttctataagatttgttctatgaaatcaaaatagtaatacgtaat |
394 |
Q |
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| T |
25146484 |
ttaatatgttgtctagagaaggattgattttaggagagacaagttttctataagatttgttctatgaaatcaaaatagtaatacgtaat |
25146396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 32140083 - 32139998
Alignment:
| Q |
208 |
attgtttccaatacagatgttcacccgaaaaaagttcaaaacctagtgatcttttctttcgtgcagtaacttccaatctgctaaac |
293 |
Q |
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| T |
32140083 |
attgtttccaatacagatgttcaaccgaacaaaggtcaaaagatagttatcttttctttcaaacagtaacttccactctgccaaac |
32139998 |
T |
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