View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15814_low_12 (Length: 399)

Name: NF15814_low_12
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15814_low_12
NF15814_low_12
[»] chr3 (4 HSPs)
chr3 (36-286)||(54024872-54025125)
chr3 (66-107)||(4227695-4227736)
chr3 (66-106)||(34898718-34898759)
chr3 (66-106)||(44685120-44685160)
[»] chr5 (8 HSPs)
chr5 (290-384)||(41111642-41111735)
chr5 (290-338)||(41813002-41813050)
chr5 (288-337)||(799424-799473)
chr5 (66-104)||(20707740-20707779)
chr5 (66-100)||(11541767-11541801)
chr5 (67-97)||(13462075-13462105)
chr5 (66-96)||(33735978-33736008)
chr5 (66-106)||(40276394-40276434)
[»] scaffold0519 (1 HSPs)
scaffold0519 (66-108)||(2912-2954)
[»] chr8 (7 HSPs)
chr8 (66-108)||(11231498-11231540)
chr8 (290-339)||(7017307-7017356)
chr8 (353-384)||(7017263-7017294)
chr8 (66-96)||(3949043-3949073)
chr8 (66-96)||(22274573-22274603)
chr8 (66-106)||(18926086-18926127)
chr8 (66-106)||(24458395-24458435)
[»] chr7 (8 HSPs)
chr7 (290-339)||(13584228-13584277)
chr7 (66-100)||(4611316-4611350)
chr7 (68-99)||(23274773-23274804)
chr7 (66-108)||(24732500-24732543)
chr7 (354-384)||(13584184-13584214)
chr7 (66-100)||(32750094-32750128)
chr7 (66-106)||(2229053-2229094)
chr7 (66-106)||(46534699-46534740)
[»] chr6 (6 HSPs)
chr6 (66-100)||(24319091-24319125)
chr6 (66-108)||(11400555-11400597)
chr6 (70-100)||(34268364-34268394)
chr6 (66-106)||(3012674-3012715)
chr6 (66-106)||(20584151-20584192)
chr6 (66-101)||(30916399-30916435)
[»] chr1 (5 HSPs)
chr1 (66-100)||(36666534-36666568)
chr1 (66-106)||(25999928-25999969)
chr1 (66-106)||(44019354-44019395)
chr1 (66-106)||(46225456-46225497)
chr1 (290-337)||(36318922-36318967)
[»] chr4 (7 HSPs)
chr4 (66-99)||(28465733-28465766)
chr4 (66-100)||(2629657-2629691)
chr4 (66-108)||(42664059-42664101)
chr4 (66-99)||(40809140-40809173)
chr4 (66-106)||(46998319-46998360)
chr4 (66-101)||(12504599-12504635)
chr4 (66-98)||(12922024-12922056)
[»] scaffold1005 (1 HSPs)
scaffold1005 (66-100)||(2910-2944)
[»] scaffold0154 (1 HSPs)
scaffold0154 (66-108)||(28771-28813)
[»] chr2 (4 HSPs)
chr2 (66-99)||(16904851-16904884)
chr2 (66-106)||(29449526-29449567)
chr2 (66-106)||(3287008-3287048)
chr2 (66-94)||(14664061-14664089)
[»] scaffold0157 (1 HSPs)
scaffold0157 (66-101)||(15842-15878)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 36 - 286
Target Start/End: Complemental strand, 54025125 - 54024872
Alignment:
Q  36 gattcggtatattataaaagatgtaataggtctccacaattaattgtgtgagctctagccattagattactagnnnnnnnnnnnnnnnnnn--gatgtaa 133  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| ||||||                    |||||||    
T  54025125 gattcggtatattataaaacatgtaataggtctccacaattaattgtgtgagcttcagccattagactactagaccaaaaaaataaaataaaagatgtaa 54025026  T
Q  134 tagtgcttgtgttatataatttgggtat-ttttaagttttaacctaattagaggnnnnnnnnnnnnn-gaaggggtctaattagaggttttagatttgaa 231  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||              ||||||||||||||||||||||| |||||||     
T  54025025 tagcgcttgtgttatataatttgggtatcttttaagttttaacctaattagaggttttttttttttttgaaggggtctaattagaggtttttgatttgag 54024926  T
Q  232 tttcttctttaacagtgggtggcattaacatatcacccattgtgacatattttgt 286  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  54024925 tttcttctt-aaccgtgggtggcattaacatatcacccattgtgatatattttgt 54024872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 4227736 - 4227695
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattacta 107  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  4227736 tctccataattaattgtgtgagctctagccattagactacta 4227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 34898759 - 34898718
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  34898759 tctccacaattaaattgtgtgagctctagccactagattact 34898718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 44685160 - 44685120
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattact 106  Q
    |||||||||||||||||||||| |||||||| |||| ||||    
T  44685160 tctccacaattaattgtgtgagttctagccactagactact 44685120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 384
Target Start/End: Complemental strand, 41111735 - 41111642
Alignment:
Q  290 gagtggtgctatatggcacgacactctagttacacgaaaggtgcacgacagnnnnnnnnnncccttaatttgcttccaattccatcataaatgtg 384  Q
    |||||||||||||||||||||| || || |||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  41111735 gagtggtgctatatggcacgaccctgtaattacacgaaaggtgcacgaca-atgttttttttccttaatttgcttccaattccatcataaatgtg 41111642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 41813050 - 41813002
Alignment:
Q  290 gagtggtgctatatggcacgacactctagttacacgaaaggtgcacgac 338  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  41813050 gagtggtgctatatagcacgacactctatttacacgaaaggtgcacgac 41813002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 799473 - 799424
Alignment:
Q  288 tagagtggtgctatatggcacgacactctagttacacgaaaggtgcacga 337  Q
    |||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  799473 tagagtggtgctatatggcacgacactctatttacacaaaaagtgcacga 799424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 20707779 - 20707740
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagatta 104  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  20707779 tctccacaattaaattgtgtgagctctagccattagatta 20707740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 11541767 - 11541801
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattag 100  Q
    |||||||| ||||||||||||||||||||||||||    
T  11541767 tctccacatttaattgtgtgagctctagccattag 11541801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 13462105 - 13462075
Alignment:
Q  67 ctccacaattaattgtgtgagctctagccat 97  Q
    |||||||||||||||||||||||||||||||    
T  13462105 ctccacaattaattgtgtgagctctagccat 13462075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 33736008 - 33735978
Alignment:
Q  66 tctccacaattaattgtgtgagctctagcca 96  Q
    |||||||||||||||||||||||||||||||    
T  33736008 tctccacaattaattgtgtgagctctagcca 33735978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 40276434 - 40276394
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattact 106  Q
    |||||||||||||||||||||| |||||||| |||| ||||    
T  40276434 tctccacaattaattgtgtgagttctagccactagaatact 40276394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 2954 - 2912
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattactag 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  2954 tctcgacaattaattgtgtgagctctagccattagattactag 2912  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 11231498 - 11231540
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattactag 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  11231498 tctcgacaattaattgtgtgagctctagccattagattactag 11231540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 7017356 - 7017307
Alignment:
Q  290 gagtggtgctatatggcacgacactctagttacacgaaaggtgcacgaca 339  Q
    |||||||||||||||||||||| || || |||||||||||||||||||||    
T  7017356 gagtggtgctatatggcacgaccctataattacacgaaaggtgcacgaca 7017307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 384
Target Start/End: Complemental strand, 7017294 - 7017263
Alignment:
Q  353 cttaatttgcttccaattccatcataaatgtg 384  Q
    ||||||||||||||||||||||||||||||||    
T  7017294 cttaatttgcttccaattccatcataaatgtg 7017263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 3949073 - 3949043
Alignment:
Q  66 tctccacaattaattgtgtgagctctagcca 96  Q
    |||||||||||||||||||||||||||||||    
T  3949073 tctccacaattaattgtgtgagctctagcca 3949043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 22274603 - 22274573
Alignment:
Q  66 tctccacaattaattgtgtgagctctagcca 96  Q
    |||||||||||||||||||||||||||||||    
T  22274603 tctccacaattaattgtgtgagctctagcca 22274573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 18926127 - 18926086
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  18926127 tctccacaattaaattgtgtgagctctagccattagactact 18926086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 24458395 - 24458435
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattact 106  Q
    |||||||| |||||||||||||||||||||| |||| ||||    
T  24458395 tctccacatttaattgtgtgagctctagccactagactact 24458435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 13584277 - 13584228
Alignment:
Q  290 gagtggtgctatatggcacgacactctagttacacgaaaggtgcacgaca 339  Q
    ||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  13584277 gagtggtgctatatggcacgatactctaattacacgaaaggttcacgaca 13584228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 4611316 - 4611350
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattag 100  Q
    |||||||||||||||||||||||||||||||||||    
T  4611316 tctccacaattaattgtgtgagctctagccattag 4611350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 23274804 - 23274773
Alignment:
Q  68 tccacaattaattgtgtgagctctagccatta 99  Q
    ||||||||||||||||||||||||||||||||    
T  23274804 tccacaattaattgtgtgagctctagccatta 23274773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 24732543 - 24732500
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattactag 108  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  24732543 tctccacaattaaattgtgtgagctctagccattagactactag 24732500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 13584214 - 13584184
Alignment:
Q  354 ttaatttgcttccaattccatcataaatgtg 384  Q
    |||||||||||||||||||||||||||||||    
T  13584214 ttaatttgcttccaattccatcataaatgtg 13584184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 32750094 - 32750128
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattag 100  Q
    |||||| ||||||||||||||||||||||||||||    
T  32750094 tctccataattaattgtgtgagctctagccattag 32750128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 2229053 - 2229094
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  2229053 tctccacaattaaattgtgtgagctctagccattagactact 2229094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 46534740 - 46534699
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  46534740 tctccacaattaaattgtgtgagctctagccattagactact 46534699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 24319091 - 24319125
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattag 100  Q
    |||||||||||||||||||||||||||||||||||    
T  24319091 tctccacaattaattgtgtgagctctagccattag 24319125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 11400555 - 11400597
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattactag 108  Q
    |||||||| | ||||||||||||||||||||||| ||||||||    
T  11400555 tctccacattaaattgtgtgagctctagccattacattactag 11400597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 34268364 - 34268394
Alignment:
Q  70 cacaattaattgtgtgagctctagccattag 100  Q
    |||||||||||||||||||||||||||||||    
T  34268364 cacaattaattgtgtgagctctagccattag 34268394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 3012715 - 3012674
Alignment:
Q  66 tctccacaatt-aattgtgtgagctctagccattagattact 106  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  3012715 tctccacaatttaattgtgtgagctctagccattagactact 3012674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 20584151 - 20584192
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  20584151 tctccacaattaaattgtgtgagctctagccattagactact 20584192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 30916399 - 30916435
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattaga 101  Q
    ||||||||||||| |||||||||||||||||||||||    
T  30916399 tctccacaattaaattgtgtgagctctagccattaga 30916435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 36666568 - 36666534
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattag 100  Q
    |||||||||||||||||||||||||||||||||||    
T  36666568 tctccacaattaattgtgtgagctctagccattag 36666534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 25999928 - 25999969
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  25999928 tctccacaattaaattgtgtgagctctagccactagattact 25999969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 44019354 - 44019395
Alignment:
Q  66 tctccacaatt-aattgtgtgagctctagccattagattact 106  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  44019354 tctccacaatttaattgtgtgagctctaaccattagattact 44019395  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 46225456 - 46225497
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  46225456 tctccacaattaaattgtgtgagctctagccattagactact 46225497  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 36318967 - 36318922
Alignment:
Q  290 gagtggtgctatatggcacgacactctagttacacgaaaggtgcacga 337  Q
    |||||||||||||| ||||||||  ||| |||||||||||||||||||    
T  36318967 gagtggtgctatatagcacgaca--ctatttacacgaaaggtgcacga 36318922  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 28465766 - 28465733
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccatta 99  Q
    ||||||||||||||||||||||||||||||||||    
T  28465766 tctccacaattaattgtgtgagctctagccatta 28465733  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 2629657 - 2629691
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattag 100  Q
    |||||||| ||||||||||||||||||||||||||    
T  2629657 tctccacatttaattgtgtgagctctagccattag 2629691  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 42664059 - 42664101
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattactag 108  Q
    |||||||| |||||||||||||||||||||| |||| ||||||    
T  42664059 tctccacatttaattgtgtgagctctagccactagactactag 42664101  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 40809173 - 40809140
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccatta 99  Q
    ||||||||||||||| ||||||||||||||||||    
T  40809173 tctccacaattaattatgtgagctctagccatta 40809140  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 46998360 - 46998319
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  46998360 tctccacaattaaattgtgtgagctctagccattagactact 46998319  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 12504635 - 12504599
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattaga 101  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12504635 tctccacaattaaattgtgtgagctctagccattaga 12504599  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 12922024 - 12922056
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccatt 98  Q
    |||| ||||||||||||||||||||||||||||    
T  12922024 tctctacaattaattgtgtgagctctagccatt 12922056  T

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Target: scaffold1005 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 2910 - 2944
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattag 100  Q
    |||||||| ||||||||||||||||||||||||||    
T  2910 tctccacatttaattgtgtgagctctagccattag 2944  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 28813 - 28771
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattactag 108  Q
    |||||||| |||||||||||||||| ||||||||| |||||||    
T  28813 tctccacatttaattgtgtgagctccagccattaggttactag 28771  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 16904851 - 16904884
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccatta 99  Q
    ||||||||||||||||||||||||||| ||||||    
T  16904851 tctccacaattaattgtgtgagctctaaccatta 16904884  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 29449526 - 29449567
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattagattact 106  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  29449526 tctccacaattaaattgtgtgagctctagccattagactact 29449567  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 3287048 - 3287008
Alignment:
Q  66 tctccacaattaattgtgtgagctctagccattagattact 106  Q
    |||||||| |||||||||||||||||||||| |||| ||||    
T  3287048 tctccacatttaattgtgtgagctctagccactagactact 3287008  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 14664061 - 14664089
Alignment:
Q  66 tctccacaattaattgtgtgagctctagc 94  Q
    |||||||||||||||||||||||||||||    
T  14664061 tctccacaattaattgtgtgagctctagc 14664089  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 15842 - 15878
Alignment:
Q  66 tctccacaattaa-ttgtgtgagctctagccattaga 101  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15842 tctccacaattaaattgtgtgagctctagccattaga 15878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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