View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_low_13 (Length: 299)
Name: NF15814_low_13
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 781028 - 780746
Alignment:
| Q |
1 |
cattttccactatacagccttcatgtatcgaatgacgccatatatgtaacaaggacattttcttagggttaagtatgtgtctagtccatgtaatcatttg |
100 |
Q |
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| T |
781028 |
cattttccactatacagccttcatgtatcgaatgacgccatatatgtaacaaggacattttcttagggttaaatatgtgtctagtccatgtaatcatttg |
780929 |
T |
|
| Q |
101 |
aatttggtttttagtacctttactcgattttcagtcctacaaattactaaactgcgtgtttttagctgagtaatcgttattttggtccctaaatatacgg |
200 |
Q |
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| T |
780928 |
aatttggtttttagtacctttactcgattttcagtcctacaaattactaaactgcgtgtttttagctgagtaatcgttattttggtccctaaatatacgg |
780829 |
T |
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| Q |
201 |
ggcggtgtcattacagtccctaaatgtattgaaattataaaaacatcccccggtttgtctctgctggttttaaaccaagaagg |
283 |
Q |
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| T |
780828 |
ggcggtgtcattacagtccctaaatgtattgaaattataaaaacatcccccggtttgtctctgctggttttaaaccaagaagg |
780746 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 3496444 - 3496403
Alignment:
| Q |
206 |
tgtcattacagtccctaaatgtattgaaattataaaaacatc |
247 |
Q |
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| T |
3496444 |
tgtcactatagtctctaaatgtattgaaattataaaaacatc |
3496403 |
T |
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