View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_low_15 (Length: 268)
Name: NF15814_low_15
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 45247815 - 45248082
Alignment:
| Q |
1 |
cggaatggctcgaccacgctcacgtgctctgactcttttggcaccatcgactgcattagcttttccatttagtgccttttgcctgagaataaaatgaaaa |
100 |
Q |
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| T |
45247815 |
cggaatggctcgaccacgctcacgtgctctgactcttttggcaccatcgactgcattagcttttccatttagtgccttttgcctgagaataaaatgaaaa |
45247914 |
T |
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| Q |
101 |
agcatctcagcaaatagacatagtgatgagtgagtcaagaagttaaatacgaaaaaagaataagacgaccttctagcttcttcatctctcattttaacat |
200 |
Q |
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| T |
45247915 |
agcatctcagcaaatagacatagtgatgagtgagtcaagaagttaaatacgaaaaaagaataagacgaccttctagcttcttcatctctcattttaacat |
45248014 |
T |
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| Q |
201 |
ccaattctttgctaggaggatactttggcaaacttgacggttcacaagcatagggctcggtggtaaaa |
268 |
Q |
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| T |
45248015 |
ccaattctttgctaggaggatactttggcaaacttgacggttcacaagcatagggctcggtggtaaaa |
45248082 |
T |
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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 40356226 - 40356336
Alignment:
| Q |
157 |
agaataagacgaccttctagcttcttcatctctcattttaacatccaattctttgctaggaggatactttggcaaacttgacggttcacaagcatagggc |
256 |
Q |
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| T |
40356226 |
agaataagagaaccttcttgcttcttcgtctctcagcttcacatccaattctttactgggaggatactttggtaaacttgatggttcacaagcatagggt |
40356325 |
T |
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| Q |
257 |
tcggtggtaaa |
267 |
Q |
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| T |
40356326 |
tcagtggtaaa |
40356336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 33269197 - 33269277
Alignment:
| Q |
168 |
accttctagcttcttcatctctcattttaacatccaattctttgctaggaggatactttggcaaacttgacggttcacaag |
248 |
Q |
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||||||||||||||||||| | | |||| |||| ||||||||||| ||||||||||| ||||| ||||| || ||||||| |
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| T |
33269197 |
accttctagcttcttcatcccgtactttagcatcaaattctttgcttggaggatacttcggcaagcttgaaggatcacaag |
33269277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 30158542 - 30158462
Alignment:
| Q |
168 |
accttctagcttcttcatctctcattttaacatccaattctttgctaggaggatactttggcaaacttgacggttcacaag |
248 |
Q |
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| T |
30158542 |
accttctagttgcttcatcccgcattttagcatcaatctccttgctaggaggatattttggtaaacttgatggatcacaag |
30158462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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