View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15814_low_16 (Length: 252)
Name: NF15814_low_16
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 353027 - 352804
Alignment:
| Q |
17 |
acttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcaccatccatgaataagtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353027 |
acttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcaccatccatgaataagtatgt |
352928 |
T |
|
| Q |
117 |
taaacgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacac |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
352927 |
taaatgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacac |
352828 |
T |
|
| Q |
217 |
attcatggattctgtattcatctc |
240 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
352827 |
attcatggattctgtattcttctc |
352804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 10579808 - 10579584
Alignment:
| Q |
17 |
acttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaag-cggcggatattgcaccatccatgaataagtatg |
115 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
10579808 |
acttataacgcaagggcgacaaccatatcctttcatctcttggattgtccaatgtgcctcttcaacacgtcggatattacaccatccatgaataagtatg |
10579709 |
T |
|
| Q |
116 |
ttaaacgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaaca |
215 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
10579708 |
ttaaacgtgtgagcatttggagcaatgtaatgcttcagctccaagtaaatttcacgagcttgttcaacaaatttctctttacatagagtatcaagcaaca |
10579609 |
T |
|
| Q |
216 |
cattcatggattctgtattcatctc |
240 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
10579608 |
cattcatggattctgtattcttctc |
10579584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 24578215 - 24577991
Alignment:
| Q |
17 |
acttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaa-gcggcggatattgcaccatccatgaataagtatg |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
24578215 |
acttataacacaagggcgacaaccatatcctttcatctcttggattgtccaatgtgcctcttcaacgcgtcggatattgcaccatccatgaataagtatg |
24578116 |
T |
|
| Q |
116 |
ttaaacgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaaca |
215 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24578115 |
ttaaacgtgtgagcgtttggagcaatgtaatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttttctttgcaaagagtatcaagcaaca |
24578016 |
T |
|
| Q |
216 |
cattcatggattctgtattcatctc |
240 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
24578015 |
cattcatggattctgtattcttctc |
24577991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University