View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15814_low_18 (Length: 247)

Name: NF15814_low_18
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15814_low_18
NF15814_low_18
[»] chr3 (28 HSPs)
chr3 (16-229)||(19334611-19334824)
chr3 (18-220)||(19376233-19376435)
chr3 (21-220)||(19393760-19393959)
chr3 (18-225)||(17726724-17726931)
chr3 (18-225)||(19027953-19028160)
chr3 (18-220)||(17942565-17942767)
chr3 (16-220)||(18147441-18147645)
chr3 (10-140)||(18104037-18104167)
chr3 (18-220)||(18873065-18873267)
chr3 (16-140)||(19437649-19437773)
chr3 (18-212)||(25463669-25463863)
chr3 (18-143)||(18016710-18016835)
chr3 (18-143)||(19352080-19352205)
chr3 (18-212)||(19381512-19381706)
chr3 (18-220)||(19414795-19414997)
chr3 (18-212)||(18165775-18165969)
chr3 (28-218)||(17950445-17950635)
chr3 (32-218)||(18109052-18109238)
chr3 (18-143)||(14895577-14895702)
chr3 (18-218)||(19400339-19400539)
chr3 (34-212)||(19464972-19465150)
chr3 (18-140)||(16677901-16678023)
chr3 (18-131)||(19354415-19354528)
chr3 (111-212)||(18116584-18116685)
chr3 (18-214)||(19425304-19425500)
chr3 (28-105)||(19439370-19439447)
chr3 (111-212)||(19461806-19461907)
chr3 (186-220)||(18144801-18144835)
[»] chr4 (2 HSPs)
chr4 (18-220)||(15536144-15536346)
chr4 (24-140)||(2709781-2709897)
[»] scaffold0648 (1 HSPs)
scaffold0648 (18-212)||(3291-3485)
[»] scaffold0640 (1 HSPs)
scaffold0640 (18-212)||(6022-6216)
[»] scaffold0274 (2 HSPs)
scaffold0274 (18-212)||(2760-2954)
scaffold0274 (18-166)||(21289-21436)
[»] chr8 (1 HSPs)
chr8 (44-214)||(8460162-8460332)
[»] chr6 (1 HSPs)
chr6 (18-140)||(13666137-13666259)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 19334824 - 19334611
Alignment:
Q  16 atcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19334824 atcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggta 19334725  T
Q  116 tgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19334724 tgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccatag 19334625  T
Q  216 gttcaggagtgata 229  Q
    ||||||||||||||    
T  19334624 gttcaggagtgata 19334611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 19376435 - 19376233
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||  | ||||||||||||||||    ||||||||    
T  19376435 caaataagagagattgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatg 19376336  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggt 217  Q
     |||||||||||||||||||||||||||| | || |  |||||| ||  || ||||||| ||  || ||||||||||||| |||||||||||||||||||    
T  19376335 gttccagaaaattcattttctcccaaattcaagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggt 19376236  T
Q  218 tca 220  Q
    |||    
T  19376235 tca 19376233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 19393959 - 19393760
Alignment:
Q  21 ataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgctt 120  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |  ||||||||||| ||||||   ||||||| ||    
T  19393959 ataagagatattgaatagttgttgtggaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgttt 19393860  T
Q  121 ccagaaaattcattttctcccaaatttatgactct-caattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc 219  Q
    |||||||||||||||| ||||||||| |||| ||| ||||||| ||||||||||||| |    | ||||||||||||||||| |||||||||||||||||    
T  19393859 ccagaaaattcattttttcccaaattcatga-tctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc 19393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 17726724 - 17726931
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||| ||||||||||||||||||||   ||||||| ||||||||| |||||  ||| |||||||| || || ||||| |||||||||| ||  |||||||    
T  17726724 caaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatg 17726823  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggt 217  Q
     |||||||||||||||||||||||||| | |||  |  |||||||||| |||||||||| ||  || |||||||||||||||||||||||||||||||||    
T  17726824 tttccagaaaattcattttctcccaaaataatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggt 17726923  T
Q  218 tcaggagt 225  Q
    | ||||||    
T  17726924 ttaggagt 17726931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 19027953 - 19028160
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||| ||||||||||||||||||||   ||||||| ||||||||| |||||  ||| |||||||| || || ||||| |||||||||| ||  |||||||    
T  19027953 caaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatg 19028052  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggt 217  Q
     |||||||||||||||||||||||||| | |||  |  |||||||||| |||||||||| ||  || |||||||||||||||||||||||||||||||||    
T  19028053 tttccagaaaattcattttctcccaaaataatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggt 19028152  T
Q  218 tcaggagt 225  Q
    | ||||||    
T  19028153 ttaggagt 19028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 17942767 - 17942565
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| || ||||||||||||||| |  |   ||||||||    
T  17942767 caaataggagagattgaatagttgttgcggaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatg 17942668  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggt 217  Q
     ||||| |||| ||||||||||||||||| |||| |  |||| ||||  || ||||||| ||   | |||||||||||||||||||||||||||||||||    
T  17942667 gttccaaaaaactcattttctcccaaattcatgaataacaatcgttttgaagcagagaggtgtgttagaacttcaccagacagcctattactccataggt 17942568  T
Q  218 tca 220  Q
    |||    
T  17942567 tca 17942565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 18147645 - 18147441
Alignment:
Q  16 atcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggta 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| || | |||||||||||||||||    ||||||    
T  18147645 atcaaataagagaggttgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggta 18147546  T
Q  116 tgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccatag 215  Q
    || |||||||||||||||||||||| || || |||| |  |||||||||||| | |||||  | |  | ||| ||| ||||||| |||||||||||| ||    
T  18147545 tggttccagaaaattcattttctcctaagttcatgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacag 18147446  T
Q  216 gttca 220  Q
    |||||    
T  18147445 gttca 18147441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 18104167 - 18104037
Alignment:
Q  10 aagaatatcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctg 109  Q
    ||||| |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| |||     
T  18104167 aagaaaatcaaataagagagattgaatagttgttgcagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacataccta 18104068  T
Q  110 ttggtatgcttccagaaaattcattttctcc 140  Q
     ||||||  ||||||||||||||||||||||    
T  18104067 ctggtatagttccagaaaattcattttctcc 18104037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 18873065 - 18873267
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||| ||||||||| ||||||||| ||| |||| ||||||||||||| || |||||||||||||  | || || |||||||||||||     |||||||    
T  18873065 caaattagagagattaaatagttgtggtgaaatattcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatg 18873164  T
Q  118 cttccagaaaattcattttctcccaaatttatgactct-caattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccatagg 216  Q
     |||||||||||||||||||||||||||| | || ||| ||| |||||||| |||||||| || ||||||||||||||||| |||||||||||||| |||    
T  18873165 tttccagaaaattcattttctcccaaattcaaga-tctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacagg 18873263  T
Q  217 ttca 220  Q
    ||||    
T  18873264 ttca 18873267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 19437773 - 19437649
Alignment:
Q  16 atcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggta 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || || ||||||||||||||||    ||||||    
T  19437773 atcaaataagagagattgaatagttgttgcggaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggta 19437674  T
Q  116 tgcttccagaaaattcattttctcc 140  Q
    || ||||||||||||||||||||||    
T  19437673 tggttccagaaaattcattttctcc 19437649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 25463863 - 25463669
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||| || ||||||||||||| || || ||||| | ||| |||     ||||||||    
T  25463863 caaataagtgagattgaatagttgtggtggaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatg 25463764  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactcca 212  Q
     ||||||||||||||||||||||||| || |||| |  ||||||| ||||||||||||| ||  || ||||||||||||| ||||||||| ||||    
T  25463763 gttccagaaaattcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattcca 25463669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 18016835 - 18016710
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||| || |  |||||||||||||||||||  |||||||    
T  18016835 caaataagagagattgaataattgtcgtggaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatg 18016736  T
Q  118 cttccagaaaattcattttctcccaa 143  Q
     |||||||||||||||||| ||||||    
T  18016735 tttccagaaaattcattttttcccaa 18016710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 19352205 - 19352080
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||| || |  |||||||||||||||||||   ||||||    
T  19352205 caaataagagagattgaataattgttgtggaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatg 19352106  T
Q  118 cttccagaaaattcattttctcccaa 143  Q
     |||||||||||||||||||||||||    
T  19352105 tttccagaaaattcattttctcccaa 19352080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 19381706 - 19381512
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| || |||||||||||||  | || |||||||| ||| |      ||||||||    
T  19381706 caaataagagagattgaataattgtggtggaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatg 19381607  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactcca 212  Q
     |||||||||||||||||||||||||||| |||| |  |||| ||||  || ||||||| ||  || ||||||||||||||||||||||||||||    
T  19381606 gttccagaaaattcattttctcccaaattcatgaatagcaatcgttttgaagcagagaggtgtgctagaacttcaccagacagcctattactcca 19381512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 19414997 - 19414795
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||| ||||||||| ||||| ||| |||||||||||||||||||| | ||  |||||||||||| || || |||||| |||||||||    ||||||||    
T  19414997 caaatcagagagattaaatagctgtggtggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatg 19414898  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggt 217  Q
     ||||| |||||||||||||||||||||| |||||||| ||||| |||||| |||||   | |    ||||||||||||| |||||||||||||| ||||    
T  19414897 gttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggt 19414798  T
Q  218 tca 220  Q
    |||    
T  19414797 tca 19414795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 18165969 - 18165775
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||||| || ||||||||||||| || || ||| |||||||| |||    ||||||||    
T  18165969 caaattagagagattgaatatttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatg 18165870  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactcca 212  Q
     ||||||||||||||||||||||||| || |||| |  |||||| ||| |||| ||||  |||  |  |||||||||| | ||||||||||||||    
T  18165869 gttccagaaaattcattttctcccaagttcatgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactcca 18165775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 17950635 - 17950445
Alignment:
Q  28 agattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaa 127  Q
    |||||||||| ||||  ||||||||| ||||| ||||| || |||||||||||||  | || ||| |||||||| |      |||||||  || ||||||    
T  17950635 agattgaataattgtgttggaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaa 17950536  T
Q  128 attcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggtt 218  Q
    |||||||||||||||| || |||| |  ||||||| ||||||||||||| ||  || ||||||||||||| |||||||||||||| |||||    
T  17950535 attcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 17950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 18109238 - 18109052
Alignment:
Q  32 tgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattc 131  Q
    |||||| ||||  ||||||||| ||||||||||| || |||||||||||||  | || ||| |||||||| |      |||||||  || ||||||||||    
T  18109238 tgaataattgtgttggaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattc 18109139  T
Q  132 attttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggtt 218  Q
    |||||||||||| || |||| |  ||||||| ||||||||||||| ||  || ||||||||||||| |||||||||||||| |||||    
T  18109138 attttctcccaagttcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 14895577 - 14895702
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||| ||| ||||||||||| |||| |||||||| ||||||||||||| || | ||||||||| | || |||||||| ||||||||||   ||||||||     
T  14895577 caaagaagtgagattgaataattgtggtggaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtata 14895676  T
Q  118 cttccagaaaattcattttctcccaa 143  Q
     ||||| |||||||||||||||||||    
T  14895677 gttccataaaattcattttctcccaa 14895702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 19400539 - 19400339
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||||||  |||||||||| ||||  ||||||||||||||||||||| || ||||||| |||||  | || |||||||||||| |      ||||||||    
T  19400539 caaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatg 19400440  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggt 217  Q
     |||| ||||||||||||||||||||  | | ||||  ||||||| ||||||||||||| ||  |  || |||||||||| |||||||||| ||| ||||    
T  19400439 gttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattacgccacaggt 19400340  T
Q  218 t 218  Q
    |    
T  19400339 t 19400339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 19465150 - 19464972
Alignment:
Q  34 aatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcat 133  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||| || || ||||| |||||| |||    | |||||| |||||||||||||||    
T  19465150 aatagttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcat 19465051  T
Q  134 tttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactcca 212  Q
    |||| ||||| || |||  |  |||||| ||| ||| |||||  |||     |||||||||||| ||||||||||||||    
T  19465050 tttcgcccaagttcatgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagcctattactcca 19464972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 16678023 - 16677901
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||| |||||||||||||||  ||| |||||||| | |||||||| || || ||||||||||| |  | || ||||||||||||||||    ||||||||    
T  16678023 caaagaagagagattgaataactgtagtggaatacttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatg 16677924  T
Q  118 cttccagaaaattcattttctcc 140  Q
     ||||||||||||||||||||||    
T  16677923 gttccagaaaattcattttctcc 16677901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 19354528 - 19354415
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||| ||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||| || |  ||||  |||||||||     ||||||||    
T  19354528 caaattagagagattaaatagttgttgtgggatattcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatg 19354429  T
Q  118 cttccagaaaattc 131  Q
     |||||||||||||    
T  19354428 gttccagaaaattc 19354415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 18116685 - 18116584
Alignment:
Q  111 tggtatgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactc 210  Q
    ||||||| ||||||||||||||||||||||||| || |||| |  ||||||| ||||||| ||||| |   || |||| ||||||||||| |||||||||    
T  18116685 tggtatggttccagaaaattcattttctcccaagttcatgaattgcaattgtctccaatcggagaggtttactagaacctcaccagacagtctattactc 18116586  T
Q  211 ca 212  Q
    ||    
T  18116585 ca 18116584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 19425500 - 19425304
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||||||  |||||||||| |||   ||| ||||||||||||||||| || |||||||||||||  | || ||| |||||||| |      ||||||||    
T  19425500 caaataaggaagattgaataattgccttgggatagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatg 19425401  T
Q  118 cttccagaaaattcattttctcccaaatttatgactct-caattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccata 214  Q
     |||| ||||||| ||||||||||||| | |||| ||| ||||||||||||||||||||| |||| |  ||||||||  || ||| ||||||| ||||    
T  19425400 attcctgaaaatttattttctcccaaaatcatga-tctgcaattgtttccaatcagagaggtgctgtataacttcacaggatagcttattacttcata 19425304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 19439447 - 19439370
Alignment:
Q  28 agattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatc 105  Q
    |||||||||||||||||||||||||| ||||||||||| ||  |||||||||| | || |  ||||||||||||||||    
T  19439447 agattgaatagttgttgtggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatc 19439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 19461907 - 19461806
Alignment:
Q  111 tggtatgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactc 210  Q
    ||||||| ||||||||||||||||||||||||| || |||| |  |||| || ||||||| ||||| |   || |||| ||||||||||| |||||||||    
T  19461907 tggtatggttccagaaaattcattttctcccaagttcatgaattgcaatcgtctccaatcggagaggtttactagaacctcaccagacagtctattactc 19461808  T
Q  211 ca 212  Q
    ||    
T  19461807 ca 19461806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 18144835 - 18144801
Alignment:
Q  186 aacttcaccagacagcctattactccataggttca 220  Q
    |||||||||||||||||||||||||||||| ||||    
T  18144835 aacttcaccagacagcctattactccatagattca 18144801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 15536346 - 15536144
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| |||| | |||||| |||||||||||| ||||| ||||||||||| || |  ||||||||||||||||    ||||||||    
T  15536346 caaataagagagattgaataattgtggcggaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatg 15536247  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggt 217  Q
     ||||||||||||||||||||||||| || |||  |  |||||||||| || ||||||| |||  | |||||||||||||||  |||||| |||| ||||    
T  15536246 gttccagaaaattcattttctcccaagttcatggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaactattattccacaggt 15536147  T
Q  218 tca 220  Q
    |||    
T  15536146 tca 15536144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 2709781 - 2709897
Alignment:
Q  24 agagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttcca 123  Q
    |||||||||||||| ||||  |||||||||||||| |||||| || |||||||||||||  | ||  || | ||| ||||||    |||||||  |||||    
T  2709781 agagagattgaataattgtgttggaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttcca 2709880  T
Q  124 gaaaattcattttctcc 140  Q
    |||||||||||||||||    
T  2709881 gaaaattcattttctcc 2709897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 3291 - 3485
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| ||||  ||||||||||||||| ||||| || ||||| |||||||  | || ||| | ||||| |||     ||||||||    
T  3291 caaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatg 3390  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactcca 212  Q
     |||||||||| ||||||||| ||||||| |||| |  ||||||||||||||||||||| ||  || ||||||||||||||||| ||||||||||    
T  3391 gttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactcca 3485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 6216 - 6022
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| ||||  ||||||||||||||| ||||| || ||||| |||||||  | || ||| | ||||| |||     ||||||||    
T  6216 caaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatg 6117  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactcca 212  Q
     |||||||||| ||||||||| ||||||| |||| |  ||||||||||||||||||||| ||  || ||||||||||||||||| ||||||||||    
T  6116 gttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactcca 6022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 2760 - 2954
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| ||||  ||||||||||||||| ||||| || ||||| |||||||  | || ||| | ||||| |||     ||||||||    
T  2760 caaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatg 2859  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactcca 212  Q
     |||||||||| ||||||||| ||||||| |||| |  ||||||||||||||||||||| ||  || ||||||||||||||||| ||||||||||    
T  2860 gttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactcca 2954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 21436 - 21289
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    |||||||||||||||||||| |||| |||||||||||| ||| ||||| || ||||| ||||||| || || ||| | ||||| |||     ||||||||    
T  21436 caaataagagagattgaataattgtggtggaatagtcc-ttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatg 21338  T
Q  118 cttccagaaaattcattttctcccaaatttatgactctcaattgtttcc 166  Q
     |||||||||| ||||||||||||||||| |||| |  |||||||||||    
T  21337 gttccagaaaactcattttctcccaaattcatgaattgcaattgtttcc 21289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 8460332 - 8460162
Alignment:
Q  44 gtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaa 143  Q
    |||||||| | ||||||||||| |||||||||||||||| || || ||| |   |||||||     |||| ||| |||||||||||| ||||||||||||    
T  8460332 gtggaatattgccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaa 8460233  T
Q  144 atttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccata 214  Q
     || || | |  |||||||||| ||||| |||| | | |  ||||||| ||||| ||||||||||||||||    
T  8460232 gttaatcatttccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactccata 8460162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 13666137 - 13666259
Alignment:
Q  18 caaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatg 117  Q
    ||||||||||||||| ||||||||| | |||||| | |||||||||| |||  |||||||||||| || ||| |||||| |||| |||    ||| ||||    
T  13666137 caaataagagagattaaatagttgtgggggaatactgccttcaaatttattttctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatg 13666236  T
Q  118 cttccagaaaattcattttctcc 140  Q
     |||||  |||||||||||||||    
T  13666237 gttccattaaattcattttctcc 13666259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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