View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15814_low_19 (Length: 244)

Name: NF15814_low_19
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15814_low_19
NF15814_low_19
[»] chr5 (1 HSPs)
chr5 (10-241)||(26887566-26887795)
[»] chr3 (6 HSPs)
chr3 (20-221)||(14825160-14825360)
chr3 (105-221)||(12072290-12072407)
chr3 (105-241)||(3206923-3207062)
chr3 (105-241)||(3190000-3190139)
chr3 (20-70)||(3190199-3190249)
chr3 (20-60)||(3207132-3207172)
[»] chr4 (1 HSPs)
chr4 (108-221)||(147726-147839)
[»] chr6 (1 HSPs)
chr6 (105-241)||(22252660-22252794)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 26887566 - 26887795
Alignment:
Q  10 acatcatcagaacaacacatcaacaaaacaaatcttcatcaacacattttccgggtctagatagacaatttacgtatactgaatgaannnnnnnnagtaa 109  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||||| ||||| ||||| ||        | |||    
T  26887566 acatcatcacaacaacacatcaacaacacaaatcttcatcaacacatttttcggatctagacagacaatttatgtatagtgaataaatttttt--aataa 26887663  T
Q  110 taattgaatcagagacaaacacaacaacaattactagttctnnnnnnnnccagtttatcgattatggaggagggaaaaattgagagagagaaatcattgt 209  Q
    |||||||||||||||||||||||||||||||||| ||||||        ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  26887664 taattgaatcagagacaaacacaacaacaattacaagttctaaaaaacaccagtttattgattatggaggagggaaaaattgagagagagaaatcgttgt 26887763  T
Q  210 ataatgagagagctgaaatccaataacccttt 241  Q
    |||||||||||||| |||||||||||||||||    
T  26887764 ataatgagagagctaaaatccaataacccttt 26887795  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 14825160 - 14825360
Alignment:
Q  20 aacaacacatcaacaaaacaaatcttcatcaacacattttccgggtctagatagacaatttacgtatactgaatgaannnnnnnnagtaataattgaatc 119  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||| ||||| ||||||||        |||||| ||||||||    
T  14825160 aacaacacatcaacaacacaaatcttcatca-cacattttccggatctagacagacaatttatgtatagtgaatgaa--ttttttagtaattattgaatc 14825256  T
Q  120 agagacaaacacaacaacaattactagttctnnnnnnnnccagtttatcgattatggaggagggaaaaatt--gagagagagaaatcattgtataatgag 217  Q
    | ||||||||||||||||||||||  |||||        | ||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||||||    
T  14825257 aaagacaaacacaacaacaattacaggttctaaaaaaaactagtttatcgataatggaggagggaaaaatttagagagagagaaatcgttgtataatgag 14825356  T
Q  218 agag 221  Q
    ||||    
T  14825357 agag 14825360  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 12072407 - 12072290
Alignment:
Q  105 agtaataattgaatcagagacaaacacaacaacaattactagttctnnnnnnnn-ccagtttatcgattatggaggagggaaaaattgagagagagaaat 203  Q
    ||||||||||||| || | |||||||||||||||||||| | ||||         ||||||||||||||||||||||||||||| |||||||||||||||    
T  12072407 agtaataattgaaccaaacacaaacacaacaacaattacaaattctaaaaaaaaaccagtttatcgattatggaggagggaaaatttgagagagagaaat 12072308  T
Q  204 cattgtataatgagagag 221  Q
    ||||||||||||||||||    
T  12072307 cattgtataatgagagag 12072290  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 3207062 - 3206923
Alignment:
Q  105 agtaataattgaatcagagacaaacacaacaacaattactagttctnnnnnnnnccagttt-atcgattatggaggagggaaaaattgagagagagaaat 203  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||        ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  3207062 agtaataattgaatcagagataaacacaacaacaattacaagttctaaaaaaaaccacttttatcgattatggaggagggaaaaattgagagagagaaat 3206963  T
Q  204 cattgtataat--gagagagctgaaatccaataacccttt 241  Q
      || ||||||  ||||||||  ||||||| |||||||||    
T  3206962 tgttctataattagagagagcataaatccattaacccttt 3206923  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 3190139 - 3190000
Alignment:
Q  105 agtaataattgaatcagagacaaacacaacaacaattactagttctnnnnnnnnccagttt-atcgattatggaggagggaaaaattgagagagagaaat 203  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||        ||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  3190139 agtaataattgaatcagagataaacacaacaacaattacaagttctaaaaaacaccacttttatcgattatggaggaggaaaaaattgagagagagaaat 3190040  T
Q  204 cattgtataat--gagagagctgaaatccaataacccttt 241  Q
      || ||||||  ||||||||  ||||||| |||||||||    
T  3190039 tgttctataattagagagagcataaatccattaacccttt 3190000  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 3190249 - 3190199
Alignment:
Q  20 aacaacacatcaacaaaacaaatcttcatcaacacattttccgggtctaga 70  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  3190249 aacaacacatcaacaacacaaatcttcatcaacacattttctggatctaga 3190199  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 3207172 - 3207132
Alignment:
Q  20 aacaacacatcaacaaaacaaatcttcatcaacacattttc 60  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  3207172 aacaacacatcaacaacataaatcttcatcaacacattttc 3207132  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 147839 - 147726
Alignment:
Q  108 aataattgaatcagagacaaacacaacaacaattactagttctnnnnnnnnccagtttatcgattatggaggagggaaaaattgagagagagaaatcatt 207  Q
    ||||||||||||||||| |||||||||||||||||| ||||||        |   ||||||||||||||||||||||||||||||||||||  |||| ||    
T  147839 aataattgaatcagagataaacacaacaacaattacaagttctaaaaaaaccacttttatcgattatggaggagggaaaaattgagagagaacaatcgtt 147740  T
Q  208 gtataatgagagag 221  Q
     || ||||||||||    
T  147739 ctaaaatgagagag 147726  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 22252794 - 22252660
Alignment:
Q  105 agtaataattgaatcagagacaaacacaacaacaattactagttctnnnnnnnnccagtttatcgattatggaggagggaaaaattgagagagagaaatc 204  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||          | | |||| | |||||||||||||||||||||||||||||||||    
T  22252794 agtaataattgaatcagagacaaacacaacaacaattaa-agttctaaaaaaa---attctatcaagtatggaggagggaaaaattgagagagagaaatc 22252699  T
Q  205 attgtataatgagagag--ctgaaatccaataacccttt 241  Q
      ||||  |||||||||  |||||||||| |||||||||    
T  22252698 gatgtagcatgagagagaactgaaatccattaacccttt 22252660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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