View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_low_23 (Length: 220)
Name: NF15814_low_23
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 40121581 - 40121377
Alignment:
| Q |
1 |
ttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatccactttgtatactttgataggtg |
100 |
Q |
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| T |
40121581 |
ttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatccactttgtatactttgataggtg |
40121482 |
T |
|
| Q |
101 |
ttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaatatttggattcaaaagggtattc |
200 |
Q |
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| T |
40121481 |
ttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagacaagaatatttggattcaaaagggtattc |
40121382 |
T |
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| Q |
201 |
atttt |
205 |
Q |
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||||| |
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| T |
40121381 |
atttt |
40121377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 40092758 - 40092554
Alignment:
| Q |
1 |
ttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatccactttgtatactttgataggtg |
100 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
40092758 |
ttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatccactttgtatactttggcaggtg |
40092659 |
T |
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| Q |
101 |
ttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaatatttggattcaaaagggtattc |
200 |
Q |
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| T |
40092658 |
ttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaatatttggattcaaaagggtattc |
40092559 |
T |
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| Q |
201 |
atttt |
205 |
Q |
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||||| |
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| T |
40092558 |
atttt |
40092554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 40125230 - 40125052
Alignment:
| Q |
1 |
ttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatccactttgtatactttgataggtg |
100 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
40125230 |
ttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatccactttgtatactttggcaggtg |
40125131 |
T |
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| Q |
101 |
ttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaata |
179 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
40125130 |
ttggtgccattggtgctattggtaacttcttattccatgtctttacaggtgattttcttactgagtgaagccaagaata |
40125052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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