View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_low_4 (Length: 590)
Name: NF15814_low_4
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 50 - 550
Target Start/End: Original strand, 27326732 - 27327232
Alignment:
| Q |
50 |
tgtttgccaaaacgagagtttcatgctgtcattcttaaaaattcatcgttactccaatgatctaccatagacggttactatcaagtctctgaatgtgtag |
149 |
Q |
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| T |
27326732 |
tgtttgccaaaacgagagtttcacgttgttattcttaaaatttcatcgtcaatccaatgatctaccatagacggttactatcaagtctccgaatgtgtag |
27326831 |
T |
|
| Q |
150 |
tctagtcgtgtgagttgatatgtttaacgagtattaagaaggaggttcatagttcaatccttgttattattaactaactctctcttgttctaacaaatta |
249 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27326832 |
tctagtcgtgtgagttgatatgtttaactagtattaagaaggaggttcatagttcaatccttgttattattaactaactctctcttgttctaacaaatta |
27326931 |
T |
|
| Q |
250 |
accactaatggtttgatttatgattaattactgaagctaatcaatcatggtgtgtcggagacgctgagggatgaggttttaagaacaagccaatgctttt |
349 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27326932 |
accactaatggtttgttttatgattaattactgaagctaatcaatcatggggtatctgagacgctgagggatgaggttttaagaacaagccaatgctttt |
27327031 |
T |
|
| Q |
350 |
tcgatctgccaagtgaagnnnnnnnggagtacataagtgaaaagctatttgatccaattagatgtggtacaagctttaatttgaaggtagacaaaaccct |
449 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27327032 |
tcgatctgccaagtgaagaaaaaaaggagtacataagtgaaaagctatttgatccaattagatgtggtacaagctttaatttgaaggtagacaaaaccct |
27327131 |
T |
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| Q |
450 |
ctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttccaagccccctgggtttaggtatatcattcttcttgcacttttatta |
549 |
Q |
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| T |
27327132 |
ctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttccaagccccctgggtttaggtatatcattcttcttgcacttttatta |
27327231 |
T |
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| Q |
550 |
c |
550 |
Q |
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| T |
27327232 |
c |
27327232 |
T |
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