View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_low_5 (Length: 504)
Name: NF15814_low_5
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_5 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 272 - 487
Target Start/End: Complemental strand, 4393536 - 4393321
Alignment:
| Q |
272 |
ttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgcc |
371 |
Q |
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| T |
4393536 |
ttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgcc |
4393437 |
T |
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| Q |
372 |
ctaatcttccttatttcttctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggct |
471 |
Q |
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| T |
4393436 |
ctaatcttccttatttcttctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggct |
4393337 |
T |
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| Q |
472 |
ttggctcaggacttct |
487 |
Q |
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| T |
4393336 |
ttggctcaggacttct |
4393321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 4393802 - 4393601
Alignment:
| Q |
6 |
agaagggtagtaacattttgagtctgaaaatatgtttggttttgattcacagaagcagttggagaattaggcacaacatcattgatgttagggaaaccaa |
105 |
Q |
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| T |
4393802 |
agaagggtagtaacattttgagtctgaaaatatgtttggttttgattcacagaagcagttggagaattaggcacaacatcattgatgttagggaaaccaa |
4393703 |
T |
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| Q |
106 |
gggaaaatactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagatgagggtacagtagcagaaatttgagaaagtgaatt |
205 |
Q |
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| T |
4393702 |
gggaaaatactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagatgagggtacagtagcagaaatttgagaaagtgaatt |
4393603 |
T |
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| Q |
206 |
ag |
207 |
Q |
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| T |
4393602 |
ag |
4393601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 475
Target Start/End: Complemental strand, 8284525 - 8284356
Alignment:
| Q |
306 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattca |
405 |
Q |
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| T |
8284525 |
ttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaattgttcacgtatcttcgtaatttcctcccttggtgggttca |
8284426 |
T |
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| Q |
406 |
ccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttgg |
475 |
Q |
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| T |
8284425 |
ccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttgg |
8284356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 468
Target Start/End: Complemental strand, 33813272 - 33813189
Alignment:
| Q |
385 |
tttcttctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttg |
468 |
Q |
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| T |
33813272 |
tttcttcttttgggggattcaccatgccactgttgaagatggactcaagtatgagaatttgttctggttttggtgtccaccttg |
33813189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 5751 - 5667
Alignment:
| Q |
390 |
tctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttg |
474 |
Q |
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|||||| ||||||||||||| || || ||||||| |||| || ||||||||||| || | ||||||||||| |||||||||| |
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| T |
5751 |
tctctttgtggattcaccatccctgagttgaagaggacttcgagaatgcggatttgctcaagctttggattccatcttggctttg |
5667 |
T |
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