View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15814_low_6 (Length: 480)
Name: NF15814_low_6
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 26690503 - 26690032
Alignment:
| Q |
1 |
accccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690503 |
accccaattaagtgcatttgatgacaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
26690404 |
T |
|
| Q |
101 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690403 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
26690304 |
T |
|
| Q |
201 |
ccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690303 |
ccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccga |
26690204 |
T |
|
| Q |
301 |
gtaagtgaattttcgaaatcttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcataaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690203 |
gtaagtgaattttcgaaatcttgctcctgcaagaacgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcataaag |
26690104 |
T |
|
| Q |
401 |
aagcaaaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttcattggtccatattcttcg |
472 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26690103 |
aagcacaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttcattggtccattttcttcg |
26690032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 26731814 - 26731447
Alignment:
| Q |
1 |
accccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731814 |
accccaattaagtgcatttgatgacaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
26731715 |
T |
|
| Q |
101 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731714 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
26731615 |
T |
|
| Q |
201 |
ccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731614 |
ccacaactctattatcagataataaacccttatacacagttcctccagcaccacttccaatctcttgactaaaacattttgttgcaagttttagttccga |
26731515 |
T |
|
| Q |
301 |
gtaagtgaattttcgaaatcttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttct |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
26731514 |
ataagtgaattttcgaaatcttgctcctgcaagaacgtagccttgattatctctaagaaagtgcttct |
26731447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 26694664 - 26694192
Alignment:
| Q |
1 |
accccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26694664 |
accccaattaagcgcatttgatgacaaattatcagttaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
26694565 |
T |
|
| Q |
101 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
26694564 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaagttcagcaagaaattcactctcttctttgtttgcttcatgcaatctctttatag |
26694465 |
T |
|
| Q |
201 |
ccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26694464 |
ccacaactctattatcagataataaacccttatacacagttcctccagcaccctttccaatctcttgactaaaacattttgttgcttgttttagttccga |
26694365 |
T |
|
| Q |
301 |
gtaagtgaattttcgaaatc---ttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcata |
397 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
26694364 |
gtaagtgaatttttgaaatcctgtagctcctgcaagaacgtagccttgattatctataacaaagtgctcgctattcttaaataagaagaaccatatcata |
26694265 |
T |
|
| Q |
398 |
aagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttcattggtccatattctt |
470 |
Q |
| |
|
|| || || | ||||||||||||||||||||||| | ||||||||| || | ||||| || ||||| ||||| |
|
|
| T |
26694264 |
aaaaaacatagcgcctcaattacccctaagccagacgcaaaccaaaggataatcttcactgatccattttctt |
26694192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 26751114 - 26751431
Alignment:
| Q |
1 |
accccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||| ||||||| ||| ||||||||||||||| |||| |||||||| || |||||||| |||||||| ||| |
|
|
| T |
26751114 |
accccaatcaagttcatttgatgagagattatcagctaaagtacccttttccatgtactcataaaccaacaatctatgctttccctcagcacaataaccc |
26751213 |
T |
|
| Q |
101 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa------ttcactctctcctttgtttgcttcatgcagtctct |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| || |||||||||| | || |
|
|
| T |
26751214 |
cacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcggcaagaaactcactctcactctctccttcattcgcttcatgcaaacgct |
26751313 |
T |
|
| Q |
195 |
ttatagccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttag |
294 |
Q |
| |
|
|||| || |||||| ||| |||||||| | |||| |||||||||||||||||||||| |||| |||||||||||||||| |||||| || |||| | |
|
|
| T |
26751314 |
ttatcgcagcaactcgattgtcagataaaacacccttatacacagttcctccagcacctcttccgatctcttgactaaaaccttttgtagcttgtttcaa |
26751413 |
T |
|
| Q |
295 |
ttccgagtaagtgaattt |
312 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
26751414 |
ttcagagtaactgaattt |
26751431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 26675578 - 26676026
Alignment:
| Q |
1 |
accccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||||||||||| ||||| | | |||| ||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
26675578 |
accccaatcaagtgcatttgatgagaggttttcagctaaagaacccttttctacgaactctaaaaccaacaatctgtgttttccggctaaacaatacccc |
26675677 |
T |
|
| Q |
101 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
200 |
Q |
| |
|
|||| ||||| || ||||| ||||| ||| ||||||| | | | ||||| ||||| ||||| || || |||| ||||||||| || |||| ||||||| |
|
|
| T |
26675678 |
aacatgccaattaagttcatatggttgagcattccaattatgttcacttccgcaaggaattctctttcaccttggtttgcttcgtgtagtcgttttatag |
26675777 |
T |
|
| Q |
201 |
ccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccga |
300 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| | ||| || |
|
|
| T |
26675778 |
ccacaaccctattatcagataataaacctttatatacagttcctccagcaccctttccaatctcttgactgaaaccttttgttgcttgtttcaattcaga |
26675877 |
T |
|
| Q |
301 |
gtaagtgaattttcgaaatc---ttgctcctgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcata |
397 |
Q |
| |
|
|||| |||||| ||||||| ||| |||||||||||||||||| |||| | || | |||||||| |||||||||||||||| |||| ||| |
|
|
| T |
26675878 |
gtaactgaattcccgaaatccaggggctattgcaagaatgtagccttgtttatttgtagcggagtgcttcctattcttaaataagaagcaccccgcaata |
26675977 |
T |
|
| Q |
398 |
aagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagca |
446 |
Q |
| |
|
|||||||| || |||||||||| || |||| || | ||||||||||| |
|
|
| T |
26675978 |
aagaagcacaatacctcaattactcccaagcaagtcgcaaaccaaagca |
26676026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 282
Target Start/End: Original strand, 26737179 - 26737459
Alignment:
| Q |
2 |
ccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaataccccc |
101 |
Q |
| |
|
||||||| |||| |||||||||||| |||||| ||||||| ||| ||||||||||||||| |||| |||||| | ||||||||||| |||||||| |||| |
|
|
| T |
26737179 |
ccccaatcaagttcatttgatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataacccc |
26737278 |
T |
|
| Q |
102 |
acataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatagc |
201 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||| |||| ||||||| | |||||| || |
|
|
| T |
26737279 |
acattccaattaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactcactgtctccttgatttgtgtcatgcaaacgctttatcgc |
26737378 |
T |
|
| Q |
202 |
cacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgt |
282 |
Q |
| |
|
||||||| || ||||||||| | ||| ||||||| ||||||||||| || ||||||||||||| ||||||| |||||| |
|
|
| T |
26737379 |
aacaactcgatcatcagataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgt |
26737459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 26698790 - 26699101
Alignment:
| Q |
1 |
accccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
100 |
Q |
| |
|
|||||||| |||| || ||||||||| |||||| ||||||| ||| ||||||||||||||| |||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
26698790 |
accccaatcaagttcacttgatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccc |
26698889 |
T |
|
| Q |
101 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
200 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||| ||| || |||||| |||| ||||||| || |||||| | |
|
|
| T |
26698890 |
cacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcagcaagaaactcattccctccttgaattgcatcatgcaatcgctttatcg |
26698989 |
T |
|
| Q |
201 |
ccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccga |
300 |
Q |
| |
|
| |||||| |||||||||||| | ||| |||| |||||||||||||| || |||| ||||||| ||||||| |||||| || | |||| ||| || |
|
|
| T |
26698990 |
cagcaactcgattatcagataaaacacctttatatacagttcctccagctccccttccgatctcttcgctaaaaccttttgtagcttgatttatttcaga |
26699089 |
T |
|
| Q |
301 |
gtaagtgaattt |
312 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
26699090 |
gtaactgaattt |
26699101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 2 - 282
Target Start/End: Original strand, 26713943 - 26714223
Alignment:
| Q |
2 |
ccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaataccccc |
101 |
Q |
| |
|
||||||| |||| |||||||| ||| |||||| ||||||| ||| ||||||||||||||| |||| |||||| | ||||||||||| |||||||| |||| |
|
|
| T |
26713943 |
ccccaatcaagttcatttgataagagattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataacccc |
26714042 |
T |
|
| Q |
102 |
acataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatagc |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||| |||| |||| || | |||||| || |
|
|
| T |
26714043 |
acattccaatcaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactcactatctccttgatttgtgtcatacaaacgctttatcgc |
26714142 |
T |
|
| Q |
202 |
cacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgt |
282 |
Q |
| |
|
||||||| || ||||||||| | ||| ||||||| ||||||||||| || ||||||||||||| ||||||| |||||| |
|
|
| T |
26714143 |
aacaactcgatcatcagataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgt |
26714223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 26733953 - 26734264
Alignment:
| Q |
1 |
accccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccc |
100 |
Q |
| |
|
|||||||| |||| || ||||||||| |||||| ||||||| ||| ||||||||||||||| |||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
26733953 |
accccaatcaagttcacttgatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccc |
26734052 |
T |
|
| Q |
101 |
cacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttatag |
200 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||| |||||||||| ||||||| ||| || |||||| |||| ||||||| || |||||| | |
|
|
| T |
26734053 |
cacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcaacaagaaactcattccctccttgacttgcatcatgcaatcgctttatcg |
26734152 |
T |
|
| Q |
201 |
ccacaactctattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccga |
300 |
Q |
| |
|
| |||||| |||||||||||| | ||| |||| |||||||||||||| || |||| ||||||| ||||||| |||||| || | |||| ||| || |
|
|
| T |
26734153 |
cagcaactcgattatcagataaaacacctttatatacagttcctccagctccccttccgatctcttcgctaaaaccttttgtagcttgatttatttcaga |
26734252 |
T |
|
| Q |
301 |
gtaagtgaattt |
312 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
26734253 |
gtaactgaattt |
26734264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 26744204 - 26744506
Alignment:
| Q |
16 |
atttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaa |
115 |
Q |
| |
|
||||||||| | |||||| ||||||| ||| ||||||||| |||| |||| |||||||| ||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
26744204 |
atttgatgaaagattatcggctaaagtaccgttttccatgcactcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaag |
26744303 |
T |
|
| Q |
116 |
ttcatgtggttaagccttccaatgacgctaacttcagcaagaaa------ttcactctctcctttgtttgcttcatgcagtctctttatagccacaactc |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| || |||||||||| | |||||| || |||||| |
|
|
| T |
26744304 |
ttcatgtggttaagccttccaatgatgcttacttcagcaagaaactcactctcactctctccttgattcgcttcatgcaaacgctttatcgcagcaactc |
26744403 |
T |
|
| Q |
210 |
tattatcagataataaacccctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaa |
309 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||| | |||||| ||||||||||||||||| ||| ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
26744404 |
gattatcagataaaacacccttatacacagttccacaagcaccctttccaatctcttgactgaaattctttgttgcatgttttagttcagagtaggtgaa |
26744503 |
T |
|
| Q |
310 |
ttt |
312 |
Q |
| |
|
||| |
|
|
| T |
26744504 |
ttt |
26744506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 47212387 - 47212491
Alignment:
| Q |
35 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
134 |
Q |
| |
|
||||||||||| || |||||| ||||| | || | || ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
47212387 |
gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttc |
47212486 |
T |
|
| Q |
135 |
caatg |
139 |
Q |
| |
|
||||| |
|
|
| T |
47212487 |
caatg |
47212491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 455
Target Start/End: Original strand, 26744562 - 26744655
Alignment:
| Q |
362 |
tgcttcttattcttaaataagaaccaccatatcataaagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttca |
455 |
Q |
| |
|
|||||| | ||||| |||||||| ||||||| |||||||||||| ||| ||||||| | || |||||| | |||||||||||||||||||| |
|
|
| T |
26744562 |
tgcttcctgttctttaataagaaacaccataccataaagaagcagaagaactcaattcctcccaagccacttgcaaaccaaagcatgaacttca |
26744655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 18658743 - 18658870
Alignment:
| Q |
35 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
134 |
Q |
| |
|
|||||||| || ||||||||||||||| | || || | ||| || || || || |||||||| ||||||||| ||||||| |||||||||||||||| || |
|
|
| T |
18658743 |
gctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggttaagccgtc |
18658842 |
T |
|
| Q |
135 |
caatgacgctaacttcagcaagaaattc |
162 |
Q |
| |
|
|||||| ||| ||||||||||||||||| |
|
|
| T |
18658843 |
caatgatgcttacttcagcaagaaattc |
18658870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 21130578 - 21130744
Alignment:
| Q |
32 |
tccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagcc |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | || || | ||| || || || || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
21130578 |
tccgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagct |
21130677 |
T |
|
| Q |
132 |
ttccaatgacgctaacttcagcaagaaattcactctctcctttgtttgcttcatgcagtctctttat |
198 |
Q |
| |
|
|| |||||| ||| |||||||||||||| || | ||||||| || ||||||| || ||||||||| |
|
|
| T |
21130678 |
tttcaatgatgcttacttcagcaagaaactctccttctccttgtttagcttcattcaatctctttat |
21130744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 21108250 - 21108112
Alignment:
| Q |
35 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
134 |
Q |
| |
|
||||||||||| |||||||||||||| |||| || | ||| | ||||||||| || ||||| |||||||| | |||||||||||||| |||||||||| |
|
|
| T |
21108250 |
gctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttc |
21108151 |
T |
|
| Q |
135 |
caatgacgctaacttcagcaagaaattcactctctcctt |
173 |
Q |
| |
|
|||||| | |||||||| |||||||||| ||||||| |
|
|
| T |
21108150 |
caatgattcctacttcagctagaaattcaccttctcctt |
21108112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 21098631 - 21098502
Alignment:
| Q |
35 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
134 |
Q |
| |
|
||||||||||| |||||||||||||| |||| || | ||| | ||||||||| || ||||| |||||||| | |||||||||||||| |||||||||| |
|
|
| T |
21098631 |
gctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttc |
21098532 |
T |
|
| Q |
135 |
caatgacgctaacttcagcaagaaattcac |
164 |
Q |
| |
|
|||||| | |||||||| |||||||||| |
|
|
| T |
21098531 |
caatgattcctacttcagctagaaattcac |
21098502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 29213149 - 29213252
Alignment:
| Q |
35 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
134 |
Q |
| |
|
||||||||||| || | |||| ||||| | || |||| ||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
29213149 |
gctaaagaaccattatacatgaactcatagacaaacattctatgtattccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc |
29213248 |
T |
|
| Q |
135 |
caat |
138 |
Q |
| |
|
|||| |
|
|
| T |
29213249 |
caat |
29213252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 21111621 - 21111748
Alignment:
| Q |
35 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
134 |
Q |
| |
|
|||||||| || ||||||||||||||| | || || | ||| || || || || |||||||| |||||||| | ||||| |||||||||||||||| || |
|
|
| T |
21111621 |
gctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtc |
21111720 |
T |
|
| Q |
135 |
caatgacgctaacttcagcaagaaattc |
162 |
Q |
| |
|
|||||| || ||||| ||||||||||| |
|
|
| T |
21111721 |
caatgatacttacttcggcaagaaattc |
21111748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 39132100 - 39132031
Alignment:
| Q |
90 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa |
159 |
Q |
| |
|
||||||| |||||||| |||| || |||||||| || |||||||| |||| ||| |||||||||||||| |
|
|
| T |
39132100 |
cacaatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttcagcaagaaa |
39132031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University