View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15814_low_9 (Length: 432)
Name: NF15814_low_9
Description: NF15814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15814_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 34322543 - 34322951
Alignment:
| Q |
18 |
cttacaacactagaagtgactcatcatcaagaagttactcacacaaacaagacctcgtgtgaaatccctttattcactaatcaaacacatgatttaagaa |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34322543 |
cttacaacactagaattgactcatcatcaagaagttactcacacaaacaagacctcgtgtgaaatccctttattcactaatcaaacacatgatttaaaaa |
34322642 |
T |
|
| Q |
118 |
agcatttttactacaa-----atgatcacaatcacacatgactatttcaaagctcctgcttagatggtttctcatcctcctcagcaatgctaaccattct |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34322643 |
ggcatttttactacaatgatcatgatcacaatcacacatgactatttcaaagctcctgcttagatggtttctcatcctcctcagcaatgctaaccattct |
34322742 |
T |
|
| Q |
213 |
aggacctttaatcttatcatgtgacaacttattaagtgtcaaagtaagaacaccattttccatcttagccttcactgaatccaaatcaacattttcaggc |
312 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34322743 |
aggacctttgatcttatcatgtgacaacttattaagtgtcaaagtaagtacaccattttccatcttagccttcactgaatccaaatcaacattttcaggc |
34322842 |
T |
|
| Q |
313 |
aatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttctcttcttctttcttcctttcaccactcactctta |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34322843 |
aatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttctcttcttctttcttcctttcaccactcactctta |
34322942 |
T |
|
| Q |
413 |
acaccctat |
421 |
Q |
| |
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||||||||| |
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| T |
34322943 |
acaccctat |
34322951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 147 - 419
Target Start/End: Complemental strand, 34312294 - 34312022
Alignment:
| Q |
147 |
cacatgactatttcaaagctcctgcttagatggtttctcatcctcctcagcaatgctaaccattctaggacctttaatcttatcatgtgacaacttatta |
246 |
Q |
| |
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||||||||||||||||||||| || |||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
34312294 |
cacatgactatttcaaagctcttgtttagatgggtgctcactctcctcagcaatgctaaccattctaggacctttagtcttatcttgtgacaacttatta |
34312195 |
T |
|
| Q |
247 |
agtgtcaaagtaagaacaccattttccatcttagccttcactgaatccaaatcaacattttcaggcaatctaaattgcctccagaatttcccataagatc |
346 |
Q |
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|||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
34312194 |
agtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttctggcaatctaaattgcctccagaattttccataagatc |
34312095 |
T |
|
| Q |
347 |
tttcaactctatgccaatgatcaccttgtttctcttcttctttcttcctttcaccactcactcttaacaccct |
419 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34312094 |
tttcaactctgtgccaatgatcaccttgtttctcttcttctttcttcctttcaccactcactctcaacaccct |
34312022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 180 - 398
Target Start/End: Original strand, 34304535 - 34304753
Alignment:
| Q |
180 |
tttctcatcctcctcagcaatgctaaccattctaggacctttaatcttatcatgtgacaacttattaagtgtcaaagtaagaacaccattttccatctta |
279 |
Q |
| |
|
|||||||| ||||||| |||||||||| | ||||| || |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34304535 |
tttctcattctcctcatcaatgctaacaactctagtacttttaatctgatcatgagacaacttattaagtgtcaaagtaagaacaccattttctatctta |
34304634 |
T |
|
| Q |
280 |
gccttcactgaatccaaatcaacattttcaggcaatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttct |
379 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||| ||||||||| |||| |
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| T |
34304635 |
gccttcacagaatccaaatcagcattttcaggcaatctaaattgcctccaaaattttccatatgatctttcagctctatgccaacgatcacctttcttct |
34304734 |
T |
|
| Q |
380 |
cttcttctttcttcctttc |
398 |
Q |
| |
|
| |||||||||||||||| |
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|
| T |
34304735 |
ccacttctttcttcctttc |
34304753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 180 - 410
Target Start/End: Complemental strand, 33426536 - 33426306
Alignment:
| Q |
180 |
tttctcatcctcctcagcaatgctaaccattctaggacctttaatcttatcatgtgacaacttattaagtgtcaaagtaagaacaccattttccatctta |
279 |
Q |
| |
|
|||||||| |||||| |||||||||| | ||||| || |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
33426536 |
tttctcattctcctcctcaatgctaacaagtctagtacttttaatcttaccatgtgacaacttacgaagtgttaaagtaagaacaccattttccatcttg |
33426437 |
T |
|
| Q |
280 |
gccttcactgaatccaaatcaacattttcaggcaatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttct |
379 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||||| ||||||||||| ||||||||| ||||| |
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| T |
33426436 |
gccttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcaccttttttct |
33426337 |
T |
|
| Q |
380 |
cttcttctttcttcctttcaccactcactct |
410 |
Q |
| |
|
| ||||||||||| ||||| ||| ||||||| |
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| T |
33426336 |
cctcttctttctttctttctccaatcactct |
33426306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 180 - 407
Target Start/End: Complemental strand, 34314702 - 34314472
Alignment:
| Q |
180 |
tttctcatcctcctcagcaatgctaaccattctaggacctttaatcttat---catgtgacaacttattaagtgtcaaagtaagaacaccattttccatc |
276 |
Q |
| |
|
|||||||| ||||| | |||||||||| | |||| || |||||||| || |||| |||| |||||||||||||||| |||||||||||||||||| | |
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| T |
34314702 |
tttctcattctccttatcaatgctaacaactctaatacttttaatctgatattcatgggacagcttattaagtgtcaaaataagaacaccattttccacc |
34314603 |
T |
|
| Q |
277 |
ttagccttcactgaatccaaatcaacattttcaggcaatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtt |
376 |
Q |
| |
|
||||||||||| ||||| |||||| |||| || |||||||||| || ||||||||||| ||||| |||||| ||||||||||| ||||||||| | |
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|
| T |
34314602 |
ttagccttcacggaatcaaaatcagcattctccggcaatctaagctgtctccagaattttccatacatcctttcagctctatgccaacgatcacctttct |
34314503 |
T |
|
| Q |
377 |
tctcttcttctttcttcctttcaccactcac |
407 |
Q |
| |
|
|||| |||||||||||||||| ||| |||| |
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|
| T |
34314502 |
tctccacttctttcttcctttctccaatcac |
34314472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 398
Target Start/End: Original strand, 34317090 - 34317272
Alignment:
| Q |
216 |
acctttaatcttatcatgtgacaacttattaagtgtcaaagtaagaacaccattttccatcttagccttcactgaatccaaatcaacattttcaggcaat |
315 |
Q |
| |
|
|||||| |||||| |||| ||||||||||||| ||||||||||||||| ||||||||| | |||||||| | ||||||||||||| |||| || |||||| |
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| T |
34317090 |
acctttgatcttaccatgcgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaat |
34317189 |
T |
|
| Q |
316 |
ctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttctcttcttctttcttcctttc |
398 |
Q |
| |
|
|| || || ||||||||||| || || ||||||||| | |||||| ||||||||| |||||| |||||||||||||||| |
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|
| T |
34317190 |
cttaactgtctccagaattttccgtacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttc |
34317272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 412
Target Start/End: Original strand, 25651244 - 25651403
Alignment:
| Q |
253 |
aaagtaagaacaccattttccatcttagccttcactgaatccaaatcaacattttcaggcaatctaaattgcctccagaatttcccataagatctttcaa |
352 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||| | |||||||||||||||||||| || ||||||| ||| ||||||||||| ||| | ||||||| |
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|
| T |
25651244 |
aaagtaagaacaccatcttccatctttgtcttaatcgaatccaaatcaacattttctggtaatctaagttgtctccagaattttccacacatcctttcaa |
25651343 |
T |
|
| Q |
353 |
ctctatgccaatgatcaccttgtttctcttcttctttcttcctttcaccactcactctta |
412 |
Q |
| |
|
||||||||||| |||||| || ||||| | |||||| |||||||| ||| | ||||||| |
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|
| T |
25651344 |
ctctatgccaacgatcacttttgttctcctgttcttttttcctttctccaataactctta |
25651403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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