View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15815_high_11 (Length: 329)
Name: NF15815_high_11
Description: NF15815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15815_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 3 - 305
Target Start/End: Complemental strand, 52376773 - 52376471
Alignment:
| Q |
3 |
aggaggagcacagacaccaacaacagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccatcaaacgaaccaagcaaaacacctgaa |
102 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52376773 |
aggaggagcaccgacaccaacagcagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccatcaaacgaaccaagcaaaacacctgaa |
52376674 |
T |
|
| Q |
103 |
tctgcacccacaaatgcacccacagcagcatccaccaacgcgcctgcagaggcaccaaaaggcaatggcgagaatgtagccggtagttctaaagcacctg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52376673 |
tctgcacccacaaatgcacccacagcagcatccaccaacgcgcctgcagaggcaccaaaaggcaatggcgcgaatgtagccggtagttctaaagcacctg |
52376574 |
T |
|
| Q |
203 |
gaagtgctccaattgtgtcgccagccggagcacctcaaggggatctaacagacgatgatgatgacgatgatcaaatggttgcaccttcaggtgcacctaa |
302 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52376573 |
aaagtgctccaattgtgtctccaaccggagcacctcaaggggatctaacagatgatgatgatgacgatgatcaaatggttgcaccttcaggtgcacctaa |
52376474 |
T |
|
| Q |
303 |
agg |
305 |
Q |
| |
|
||| |
|
|
| T |
52376473 |
agg |
52376471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University