View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15815_high_9 (Length: 355)
Name: NF15815_high_9
Description: NF15815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15815_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 13740914 - 13740565
Alignment:
| Q |
1 |
cctcacaagccatttttgttgggttttactgtccaacttcatatctatggatcttcataatttgtggttcattcatccattattaatttctcaccaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13740914 |
cctcacaagccatttttgttgggttgtactgtccaacttcatatctatggatcttcataatgtgtgattcattcatccattattaatttctcaccaactt |
13740815 |
T |
|
| Q |
101 |
atcgtaaacattggccaatattaaatggattcataggactgactaatgtgtatttacacctttgttttgttctgtcaactttcaccatcacaaccattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13740814 |
atcgtaaacattggccaatattaaatggattcataggactgactaatgtgtatttacacctttgttttgttctgtcaactttcaccatcacaaccattgt |
13740715 |
T |
|
| Q |
201 |
atttagaaatttatatgtgtgcttgttatcattgttaattaaagaaatgttactttgttttcacatgtgctaagtggtgagacgtacgagctccacgtca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13740714 |
atttagaaatttatatgtgtgcttgttatcattgttaattaaagaaatgttactttgttttcacatgtgctaagtggtgagacgtacgagctccacgtcg |
13740615 |
T |
|
| Q |
301 |
tcgccactaaacttggtgctcc--attcaaaggccatttcgtctctgctg |
348 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13740614 |
tcgccactaaacttggtgctccatattcaaaggccatttcgtctctgctg |
13740565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 13754867 - 13754669
Alignment:
| Q |
27 |
tactgtccaacttcatatctatggatcttcataattt-gtggttcattcatccattattaatttctcaccaacttatcgtaaacattggccaatattaaa |
125 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |||||||| |||||||||| ||||||||| | |||||||| |
|
|
| T |
13754867 |
tactgtccaacttcatatctattaatctttataattttgtggttttttcatccatttttaatttcccaccaacttactataaacattgagccatattaaa |
13754768 |
T |
|
| Q |
126 |
tggattcataggactgactaatgtgtatttacacctttgttttgttctgtcaactttcaccatcacaaccattgtatttagaaatttatatgtgtgctt |
224 |
Q |
| |
|
||||| || |||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13754767 |
tggatgcagaggactaactaatgtggatttactcctttgttttgttctgtcaaccttcaccatcacaaccattgtatttagaaatttatatgtgtgctt |
13754669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 13768269 - 13768071
Alignment:
| Q |
27 |
tactgtccaacttcatatctatggatcttcataattt-gtggttcattcatccattattaatttctcaccaacttatcgtaaacattggccaatattaaa |
125 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||||| |||||||||| ||||||| ||||||||||| ||||||||| | |||||||| |
|
|
| T |
13768269 |
tactgtccaacttcatatctatgaatctttataattttgtggttttttcatccatttttaatttgtcaccaacttactataaacattgagccatattaaa |
13768170 |
T |
|
| Q |
126 |
tggattcataggactgactaatgtgtatttacacctttgttttgttctgtcaactttcaccatcacaaccattgtatttagaaatttatatgtgtgctt |
224 |
Q |
| |
|
||||| || |||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13768169 |
tggatgcagaggactaactaatgtggatttactcctttgttttgttctgtcaacgttcaccatcacaaccattgtatttagaaatttataggtgtgctt |
13768071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 13733165 - 13732979
Alignment:
| Q |
30 |
tgtccaacttcatatctatggatcttcataattt-gtggttcattcatccattattaatttctcaccaacttatcgtaaacattggccaatattaaatgg |
128 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
13733165 |
tgtccaacttcgtatttatggatcttcataattttgtagttcattcatccattattaatttctcaccaacttactgtaaacattgggcaatattaaat-- |
13733068 |
T |
|
| Q |
129 |
attcataggactgactaatgtgtatttacacctttgttttgttctgtcaactttcaccatcacaaccattgtatttagaaatttatatgtgtgctt |
224 |
Q |
| |
|
|| || ||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
13733067 |
-------gggctaactaatgtggatttacacctttgttttgttctgtcagctttcaccatcataaccgttgtatttagaaatttatatgtgtgctt |
13732979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 8671051 - 8671127
Alignment:
| Q |
148 |
gtgtatttacacctttgttttgttctgtcaactttcaccatcacaaccattgtatttagaaatttatatgtgtgctt |
224 |
Q |
| |
|
||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8671051 |
gtgtatttaaaccttttttttgttatatcaactttcaccatcacaaccattgtatttagaaatttatttgtgtgctt |
8671127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 8716196 - 8716165
Alignment:
| Q |
32 |
tccaacttcatatctatggatcttcataattt |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8716196 |
tccaacttcatatctatggatcttcataattt |
8716165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 8713837 - 8713910
Alignment:
| Q |
151 |
tatttacacctttgttttgttctgtcaactttcaccatcacaaccattgtatttagaaatttatatgtgtgctt |
224 |
Q |
| |
|
|||||| ||| || ||||||| | | || ||||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
8713837 |
tatttaaaccctttttttgttatataaattttcaccatcacaaccaatgtatttagaattttatttgtatgctt |
8713910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University