View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15815_low_1 (Length: 394)
Name: NF15815_low_1
Description: NF15815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15815_low_1 |
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| [»] scaffold0087 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 5890936 - 5890569
Alignment:
| Q |
10 |
aacaaaatgtctggcaaactcaatgacaacatacaacaattgggttgtgccaaaaatggtttagagagtttagatctaagtgataacccattcgaatgtg |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| | ||||||||||||||||||||||||||||| ||| |
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| T |
5890936 |
aacaaactgtctggcaaactcaatgacaacatacaacaattgtgttctgcaaaaaatggtttagggcgtttagatctaagtgataacccattcgaacgtg |
5890837 |
T |
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| Q |
110 |
gatcacttccagatgtttcatatttttcatcattggacacattatcatttcgaaataccaatgtcgttggcatattacctaaatcatatgttcacttgtc |
209 |
Q |
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| T |
5890836 |
ggtcacttccagatgtttcatatttttcatcattggacacattatctcttcgaaataccaatgtcgttggcatattacctaaatcatatgttcacttgtc |
5890737 |
T |
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| Q |
210 |
ttttgtcacaaatttagatctttctcgtaatcatttgaatggagtggatatctttgatggtgaatttctatcgaccataacgactctagacctcagtttt |
309 |
Q |
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| T |
5890736 |
ttttctcacaaatttagatctttctcataatcatttgaatggagtggatatctttgatggtgaatttctatcgaccatgacgactctagacctcagtttt |
5890637 |
T |
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| Q |
310 |
aaccaattgagtggatcaatgcctctattagagataaccaaactttcttcattagaattacttgatct |
377 |
Q |
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| T |
5890636 |
aaccaactgagtggatcaatgcctctattagagataaccaaacttgcttcattagaactacttgatct |
5890569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 366
Target Start/End: Original strand, 5826776 - 5826904
Alignment:
| Q |
238 |
aatcatttgaatggagtggatatctttgatggtgaatttctatcgaccata-acgactctagacctcagttttaaccaattgagtggatcaatgcctcta |
336 |
Q |
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| T |
5826776 |
aatcatttgaatggtgtggatatcattgatgatatatctctatcaaccatgcacga-tctagatctcagttttaaccaattgaatggatcattaccacta |
5826874 |
T |
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| Q |
337 |
ttagagataaccaaactttcttcattagaa |
366 |
Q |
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| T |
5826875 |
tttgagattactaaacttccctcattagaa |
5826904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 5829166 - 5829328
Alignment:
| Q |
17 |
tgtctggcaaactcaatgacaacatacaacaattgggttgtgccaaaaatggtttagagagtttagatctaagtgataacccattcgaatgtggatcact |
116 |
Q |
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| T |
5829166 |
tgtctagcaaacttagtgacaacatacaacaattgtgttccgcaaaaaatggtttaaggaaattggatctaagcgataacccatttattagaggaccact |
5829265 |
T |
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| Q |
117 |
tccagatgtttcatatttttcatcattggacacattatcatttcgaaataccaatgtcgttgg |
179 |
Q |
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||| ||| |||| | |||||||| ||||| ||||||| |||||||| ||||||| ||||| |
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| T |
5829266 |
tcctgatttttcttgcttttcatctttggaggcattatctcttcgaaatgccaatgttgttgg |
5829328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 5754893 - 5755033
Alignment:
| Q |
33 |
tgacaacatacaacaattgggttgtgccaaaaatggtttagagagtttagatctaagtgataacccattcgaatgtgga-tcacttccagatgtttcata |
131 |
Q |
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||||||||||||||||||| || | ||||||| |||| || ||| |||||||| ||||||||||| |||||| |||||||||||| |||||| |
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| T |
5754893 |
tgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataacccattc-aatgtgatgtcacttccagatttttcatg |
5754991 |
T |
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| Q |
132 |
tttttcatcattggacacattatcatttcgaaataccaatgt |
173 |
Q |
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| T |
5754992 |
ttttccatttttggagacattatctcttggaaataccaatgt |
5755033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 11921 - 12077
Alignment:
| Q |
17 |
tgtctggcaaactcaatgacaacatacaacaattgggttgtgccaaaaatggtttagagagtttagatctaagtgataacccattcgaatgtg-gatcac |
115 |
Q |
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||||||||||||| | ||||||||||||||||||| || ||||||||| |||| || ||| |||||||| ||||||||||| || ||| |||| |
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| T |
11921 |
tgtctggcaaacttagtgacaacatacaacaattgtgtaccaccaaaaatgatttaaggaatttggatctaagcaataacccattc-aaagtgatgtcac |
12019 |
T |
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| Q |
116 |
ttccagatgtttcatatttttcatcattggacacattatcatttcgaaataccaatgt |
173 |
Q |
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| T |
12020 |
ttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgt |
12077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 268
Target Start/End: Original strand, 39601 - 39753
Alignment:
| Q |
116 |
ttccagatgtttcatatttttcatcattggacacattatcatttcgaaataccaatgtcgttggcatattacctaaatcatatgttcacttgtcttttgt |
215 |
Q |
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|||| ||| |||||| |||||||| ||||| |||||||| |||||||||||||| | || |||||| |||| ||||||| | | ||| || ||||| | |
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| T |
39601 |
ttcctgatatttcatgcttttcatccttggatacattatcgcttcgaaataccaatattgtcggcatactaccaaaatcatttttccacatgccttttct |
39700 |
T |
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| Q |
216 |
cacaaatttagatctttctcgtaatcatttgaatggagtggatatctttgatg |
268 |
Q |
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| T |
39701 |
tggaactttagatttttcccataatcatttgaatggtgtggatatcattgatg |
39753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 29303 - 29459
Alignment:
| Q |
17 |
tgtctggcaaactcaatgacaacatacaacaattgggttgtgccaaaaatggtttagagagtttagatctaagtgataacccattcgaatgtgga-tcac |
115 |
Q |
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||||||||||||| | ||||||||||||||||||| || | ||||||| |||| || ||| |||||||| ||||||||||| || ||| |||| |
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| T |
29303 |
tgtctggcaaacttagtgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataacccattcaaa-gtgatgtcac |
29401 |
T |
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| Q |
116 |
ttccagatgtttcatatttttcatcattggacacattatcatttcgaaataccaatgt |
173 |
Q |
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| T |
29402 |
ttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgt |
29459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 54561 - 54755
Alignment:
| Q |
17 |
tgtctggcaaactcaatgacaacatacaacaattgggttgtgccaaaaatggtttagagagtttagatctaagtgataacccattcgaatgtgga-tcac |
115 |
Q |
| |
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|||| |||||||| | ||||||||||||||||||| || | ||||||| |||| || ||| |||||||| ||||||||||| || ||| |||| |
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| T |
54561 |
tgtccggcaaacttagtgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataacccattcaaa-gtgatgtcac |
54659 |
T |
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| Q |
116 |
ttccagatgtttcatatttttcatcattggacacattatcatttcgaaataccaatgtcgttggcatattacctaaatcatatgttcacttgtctt |
211 |
Q |
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|||||||| |||||| |||| ||| ||||| |||||||| |||||||||||||||| || || ||| || ||||||| |||||| ||||||| |
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| T |
54660 |
ttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccaaaatcatttgttcatttgtctt |
54755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 18960 - 19111
Alignment:
| Q |
22 |
ggcaaactcaatgacaacatacaacaattgggttgtgccaaaaatggtttagagagtttagatctaagtgataacccattcgaatgtgga-tcacttcca |
120 |
Q |
| |
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|||||||| | ||||||||||||||||||| || | ||||||| |||| || ||| |||||||| ||||||||||| || ||| ||||||||| |
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| T |
18960 |
ggcaaacttagtgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataacccattcaaa-gtgatgtcacttcca |
19058 |
T |
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| Q |
121 |
gatgtttcatatttttcatcattggacacattatcatttcgaaataccaatgt |
173 |
Q |
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||| |||||| |||| ||| ||||| |||||||| |||||||||||||||| |
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| T |
19059 |
gatttttcatgttttccatttttggagacattatctcttcgaaataccaatgt |
19111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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