View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15815_low_2 (Length: 377)
Name: NF15815_low_2
Description: NF15815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15815_low_2 |
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| [»] scaffold0045 (5 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 39583 - 39928
Alignment:
| Q |
13 |
attattcttaagcaaggaaccaggctcttttctaaattccttggataagctctatgaaggcatggttcaaggactacgagcctatccacttaatattcct |
112 |
Q |
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| T |
39583 |
attattcttaagcaaggaaccaggcccttttttaaattccttggataagctctatgaaggcatggttccaggactacgagcctatccacttaatattcct |
39682 |
T |
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| Q |
113 |
ggttttgcataccatcatgctctcaaggtttgtgtctaaattaaatttccatttcaattatcaaaaagtttgcttcagttataaatcctttatattat-- |
210 |
Q |
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| T |
39683 |
ggttttgcataccaccatgctcttaaggttcatgtataaattaaatttccatttcaattatcaacaagtttgcttcagttataattccttgacattcttt |
39782 |
T |
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| Q |
211 |
-gtagtattgttggactaattaataataaacatgtacactccttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaa |
309 |
Q |
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| T |
39783 |
agtactaattttggac---tttataataaacatgtacactccttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaa |
39879 |
T |
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| Q |
310 |
gaaagaatgaaaataaggtggaaagtacagttgatctaatggatgggtt |
358 |
Q |
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| T |
39880 |
gaaagaatgaaaataaggtgaaaagtacaagtgatctaatggatgggtt |
39928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 31942 - 32053
Alignment:
| Q |
24 |
gcaaggaaccaggctcttttctaaattccttggataagctctatgaaggcatggttcaaggactacgagcctatccacttaatattcctggttttgcata |
123 |
Q |
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| T |
31942 |
gcaaggagccaggcccttttctaaattccttggataagctctatcaaggcttgcttccaggtgtgagagcctatccacttaacattcctggttttgcata |
32041 |
T |
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| Q |
124 |
ccatcatgctct |
135 |
Q |
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| T |
32042 |
ccaccatgctct |
32053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 24953 - 25075
Alignment:
| Q |
13 |
attattcttaagcaaggaaccaggctcttttctaaattccttggataagctctatgaaggcatggttcaaggactacgagcctatccacttaatattcct |
112 |
Q |
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||||||||| ||||| || |||||| |||||||||||||||||||||| |||||| ||| | || ||| |||| | ||||||||||| |||| |||||| |
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| T |
24953 |
attattctttagcaaagagccaggcccttttctaaattccttggataaactctatcaagacttgcttctaggagtgagagcctatccaattaacattcct |
25052 |
T |
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| Q |
113 |
ggttttgcataccatcatgctct |
135 |
Q |
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| T |
25053 |
ggttttgcataccaccatgctct |
25075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 358
Target Start/End: Original strand, 25227 - 25331
Alignment:
| Q |
251 |
cttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtggaaagtacagttgatctaatg |
350 |
Q |
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| T |
25227 |
cttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaa---acaattgatctaatg |
25323 |
T |
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| Q |
351 |
gatgggtt |
358 |
Q |
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|||||||| |
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| T |
25324 |
gatgggtt |
25331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 32440 - 32541
Alignment:
| Q |
254 |
aaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtggaaagtacagttgatctaatggat |
353 |
Q |
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| T |
32440 |
aaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaa---acaagtgatctaatggat |
32536 |
T |
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| Q |
354 |
gggtt |
358 |
Q |
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||||| |
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| T |
32537 |
gggtt |
32541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 5215 - 5093
Alignment:
| Q |
13 |
attattcttaagcaaggaaccaggctcttttctaaattccttggataagctctatgaaggcatggttcaaggactacgagcctatccacttaatattcct |
112 |
Q |
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||||||||| |||||||| ||||| |||||||| ||||||||||||| |||||| ||| | || ||| |||| | ||||||||||| |||| |||||| |
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| T |
5215 |
attattctttagcaaggagccaggtccttttctacattccttggataaactctatcaagacttgcttctaggagtgagagcctatccaattaacattcct |
5116 |
T |
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| Q |
113 |
ggttttgcataccatcatgctct |
135 |
Q |
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| T |
5115 |
ggttttgcataccaccatgctct |
5093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 4996 - 4893
Alignment:
| Q |
252 |
ttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtggaaagtacagttgatctaatgg |
351 |
Q |
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||||||||| ||||||||||||||||||| ||| |||| ||||| || ||| ||| ||||| ||| || ||||||||||| ||| |||||||||||| |
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| T |
4996 |
ttaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaa---acaattgatctaatgg |
4900 |
T |
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| Q |
352 |
atgggtt |
358 |
Q |
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||||||| |
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| T |
4899 |
atgggtt |
4893 |
T |
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