View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15816_high_1 (Length: 536)
Name: NF15816_high_1
Description: NF15816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15816_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 485389 - 485917
Alignment:
| Q |
1 |
cgccacaccttcctttggtcccatta---tgcatgacaaatcacattcacatctctataaatacacataaattcttgccttattgaaccatcatcaaaac |
97 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
485389 |
cgccacaccttcctttggtcccattattatgcatgacaaatcacattcacatctctataaatacacataaattcttgccttattgatccatcatccaaac |
485488 |
T |
|
| Q |
98 |
catatcacataacaaaacaagcaagttttaattcatttcatcaaatattcaaaaacataccaaatcaaatatcctcatattcattcatagcacattttta |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
485489 |
catatcacataacaaaacaagcaagttttaattcatttcatcaaatattcaaaaacataccaaatcaaatatcctcatattcattcatagcacattttta |
485588 |
T |
|
| Q |
198 |
gcacacgaaatcccattattttctcattcaatattctcacaagtattacactctctcactcaccacaaaattctatatatatacaaacactagcaccttt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
485589 |
gcacacgaaatcccattattttctcattcaatattctcacaagtattacactctctcactcaccacaaaattctatatatacacaaacactagcaccttt |
485688 |
T |
|
| Q |
298 |
cttctctcacgttaaca-tacacatacaccattccaactttctcattctcaattagaaaccctagcctnnnnnnnnntgtctcctccaaaccctacccta |
396 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
485689 |
cttctctcacgttaacattacacatccatcattccaactttctcattctcaattagaaaccctagcct-aaaaaaaatgtctcctccaaaccctacccta |
485787 |
T |
|
| Q |
397 |
aactcaaccagaaacaacaccgacaacattatcaccaccaccaaacatgttaacccttgtcctaattcacccttcaccttcaccctatccgactcaactc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
485788 |
aactcaaccagaaacaacaccgacaacattatcaccaccaccaaacatgttaacccttgtcccaattcacccttcaccttcaccctatccgactcaactc |
485887 |
T |
|
| Q |
497 |
taaaagttaacaaccacgtcatcctctctg |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
485888 |
taaaagttaacaaccacgtcatcctctctg |
485917 |
T |
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