View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15816_high_16 (Length: 319)
Name: NF15816_high_16
Description: NF15816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15816_high_16 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 18342690 - 18342984
Alignment:
| Q |
2 |
taatacctcgggtgctaatgaaactattttagtgaaatttagctgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttct |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342690 |
taatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttct |
18342789 |
T |
|
| Q |
102 |
ttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcactt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342790 |
ttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcactt |
18342889 |
T |
|
| Q |
202 |
cagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342890 |
cagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
18342984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 48288630 - 48288862
Alignment:
| Q |
2 |
taatacctcgggtgctaatgaaactattttagtgaaatttagctgtctcaattctcgggctattgcggaaaaaat----tcgagttccttttggatttcc |
97 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||| |
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| T |
48288630 |
taatacctcggatgttaatgaaactatttaagtgaaatttacctgtctcaattctcgggctattgcaaaaaaaaaaaaatcgagttccttttgaatttcc |
48288729 |
T |
|
| Q |
98 |
ttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatc |
197 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | ||| ||| |
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| T |
48288730 |
ttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaatc |
48288824 |
T |
|
| Q |
198 |
acttcagatctttctaaagatgaatttggtactgcttt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| |
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| T |
48288825 |
acttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 36840497 - 36840757
Alignment:
| Q |
36 |
aaatttagctgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
135 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840497 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
36840596 |
T |
|
| Q |
136 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840597 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
36840696 |
T |
|
| Q |
236 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840697 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 164630 - 164380
Alignment:
| Q |
46 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
164630 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
164531 |
T |
|
| Q |
146 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
164530 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
164431 |
T |
|
| Q |
246 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
164430 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
164380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 277418 - 277629
Alignment:
| Q |
2 |
taatacctcgggtgctaatgaaactattttagtgaaatttagctgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttct |
101 |
Q |
| |
|
|||||| || || ||||||||||||||||| || ||||| | | ||||||||| ||| || ||| ||||| ||||||||||||||| || |||| | |
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| T |
277418 |
taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttt |
277517 |
T |
|
| Q |
102 |
ttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcactt |
201 |
Q |
| |
|
| |||||| | |||||| ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| | || |||| |
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| T |
277518 |
tgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattactt |
277617 |
T |
|
| Q |
202 |
cagatctttcta |
213 |
Q |
| |
|
| |||||||||| |
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|
| T |
277618 |
cggatctttcta |
277629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 46 - 296
Target Start/End: Original strand, 14249096 - 14249346
Alignment:
| Q |
46 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14249096 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
14249195 |
T |
|
| Q |
146 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14249196 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
14249295 |
T |
|
| Q |
246 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14249296 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 2 - 296
Target Start/End: Complemental strand, 1027 - 733
Alignment:
| Q |
2 |
taatacctcgggtgctaatgaaactattttagtgaaatttagctgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttct |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| || || ||||||||||||||||||||||||||||||| |
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|
| T |
1027 |
taatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgatcgcaccaaaaattcgagttccttttggatttccttct |
928 |
T |
|
| Q |
102 |
ttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcactt |
201 |
Q |
| |
|
| |||||||| ||| || ||||| |||||||| |||||| || || || ||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
927 |
tgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaattacagctctgatcactt |
828 |
T |
|
| Q |
202 |
cagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
827 |
ctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgattactagctcctatg |
733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
189 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
289 |
ctcctatg |
296 |
Q |
| |
|
|||||||| |
|
|
| T |
46699227 |
ctcctatg |
46699234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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