View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15816_high_8 (Length: 365)
Name: NF15816_high_8
Description: NF15816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15816_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 42258483 - 42258125
Alignment:
| Q |
1 |
caaaccatgttgtcctttaaattaatgctactataatctttaacaaaataatatatata----ctatactataaaaatcagtgctaatttccctttaact |
96 |
Q |
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| T |
42258483 |
caaaccatgttgtcctttaaattaatgctactataatctttaacaaaataatatatatatacactatactataaaaatcagtgctaatttccctttaact |
42258384 |
T |
|
| Q |
97 |
ttacaataaactgttataagcaccatcagaatcaataaacagttatttgaagcagtttaaagactttaaggtatgtgactttaggcctttagcaaacaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42258383 |
ttacaataaactgttataagcaccatcagaatcaataaacagttatttgaagcagtttaaagactttaaggtatgtgactttaggcctttagcaaacaaa |
42258284 |
T |
|
| Q |
197 |
ttagttttaataaattttgtttcaaccccacagccatatgtaaagcagggacaagcattttgctaaagagaaggaaagagaaaactaaaaaggaacaagt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42258283 |
ttagttttaataaattttgtttcaaccccacagccatatgtaaagtagggacaagca-tttgctaaagagaaggaaagagaaaactaaaaaggaacaagt |
42258185 |
T |
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| Q |
297 |
ttgttaacaaaaaattcgttgttgaagaatcactcctcaactcttaacatcttctgtgct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42258184 |
ttgttaacaaaaaattcgttgttgaagaatcactcctcaactcttaacatcttctgtgct |
42258125 |
T |
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