View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15816_high_9 (Length: 364)
Name: NF15816_high_9
Description: NF15816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15816_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 33550250 - 33550454
Alignment:
| Q |
14 |
aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550250 |
aatatcatcattttccaaacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa |
33550349 |
T |
|
| Q |
114 |
aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550350 |
aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt |
33550449 |
T |
|
| Q |
214 |
tatca |
218 |
Q |
| |
|
||||| |
|
|
| T |
33550450 |
tatca |
33550454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 26230624 - 26230829
Alignment:
| Q |
14 |
aatatcatcattttccagacaatgttgacattatttttggatactacggaaataat-ctttttaaagttataatgttcagggaagtattttgcgctacta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26230624 |
aatatcatcattttccagacaatgttgacattatttttggatactacggaaataattctttttaaagttataatgttcagggaagtattttgcgctacta |
26230723 |
T |
|
| Q |
113 |
aaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26230724 |
aaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacg |
26230823 |
T |
|
| Q |
213 |
ttatca |
218 |
Q |
| |
|
|||||| |
|
|
| T |
26230824 |
ttatca |
26230829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 26230909 - 26230975
Alignment:
| Q |
298 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26230909 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
26230975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 33550533 - 33550599
Alignment:
| Q |
298 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550533 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
33550599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 8335582 - 8335378
Alignment:
| Q |
14 |
aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8335582 |
aatatcatcattttccagacaatgttgacattatttttggatactatggaaataatctttttaaagttataatgttcagggaagttttttgcgctactaa |
8335483 |
T |
|
| Q |
114 |
aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
8335482 |
aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaaggtacat |
8335383 |
T |
|
| Q |
214 |
tatca |
218 |
Q |
| |
|
||||| |
|
|
| T |
8335382 |
tatca |
8335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 8335298 - 8335235
Alignment:
| Q |
298 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtg |
361 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8335298 |
agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtg |
8335235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 4684949 - 4684810
Alignment:
| Q |
79 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684949 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
4684850 |
T |
|
| Q |
179 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684849 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
4684810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 4684730 - 4684664
Alignment:
| Q |
298 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684730 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
4684664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 26632567 - 26632645
Alignment:
| Q |
14 |
aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcag |
92 |
Q |
| |
|
|||||||||||||| | || |||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
26632567 |
aatatcatcatttttccgataatgttgacattctttttggataatataaaaataatctttttaaagttataatgttcag |
26632645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University