View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15817_high_1 (Length: 771)

Name: NF15817_high_1
Description: NF15817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15817_high_1
NF15817_high_1
[»] chr7 (8 HSPs)
chr7 (316-748)||(7143728-7144158)
chr7 (160-317)||(7142483-7142642)
chr7 (12-161)||(7141340-7141489)
chr7 (228-317)||(9405377-9405466)
chr7 (173-316)||(10670060-10670205)
chr7 (198-325)||(9070895-9071025)
chr7 (250-312)||(26839717-26839779)
chr7 (200-278)||(3400295-3400375)
[»] chr4 (5 HSPs)
chr4 (165-317)||(47024273-47024427)
chr4 (191-317)||(17024449-17024577)
chr4 (178-317)||(10451002-10451145)
chr4 (257-317)||(12806479-12806539)
chr4 (178-272)||(10319794-10319890)
[»] chr5 (4 HSPs)
chr5 (173-309)||(26329585-26329723)
chr5 (226-317)||(12265126-12265217)
chr5 (226-316)||(20715083-20715172)
chr5 (236-316)||(17028776-17028857)
[»] scaffold0650 (1 HSPs)
scaffold0650 (178-317)||(5257-5398)
[»] chr3 (3 HSPs)
chr3 (179-316)||(13911745-13911884)
chr3 (207-291)||(33578234-33578320)
chr3 (254-314)||(33914126-33914186)
[»] chr1 (4 HSPs)
chr1 (173-317)||(26657936-26658082)
chr1 (205-316)||(23519259-23519370)
chr1 (202-316)||(12810635-12810751)
chr1 (198-260)||(34533099-34533163)
[»] chr8 (4 HSPs)
chr8 (228-317)||(22892762-22892851)
chr8 (228-317)||(11309814-11309903)
chr8 (226-314)||(32239765-32239853)
chr8 (202-317)||(28900845-28900962)
[»] chr6 (2 HSPs)
chr6 (226-316)||(17860003-17860094)
chr6 (226-317)||(30235890-30235981)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 316 - 748
Target Start/End: Original strand, 7143728 - 7144158
Alignment:
Q  316 tcaaggtatgaacgaatcttggaaagcatcggtagaagctaacatagaggctttggagcaacttgcagaggtacgacattagatggatctgctagatctc 415  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7143728 tcaaggtatgaaggaatctaggaaagcatcggtagaagctaacatagaggctttggagcaacttgcagaggtacgacattagatggatctgctggatctc 7143827  T
Q  416 agatgcaatcctcagaggcagtttcctcctacaataccaccaacaattgttgatgttgtcccatagatcgatgagnnnnnnnnccattggataagaattc 515  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||||||    
T  7143828 agatgcaatcctcagaggcagtttcctgctacaataccaccaacaattgttgatgttgtcccatagatcaatgagtttttt--ccattggataagaattc 7143925  T
Q  516 ttactatgtattgcttgctcttgaacatctgatcatcaataaagttgttttgtaaccatcttcttcgttatctgcatatgattttgaggcttttaaagaa 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  7143926 ttactatgtattgcttgctcttgaacatctgatcatcaataaagttgttttgtaaccatcttcttcattgtctgcatatgattttgaggcttttaaagaa 7144025  T
Q  616 aaaatcataattaagttggctgctcaaagaactgctatagaaatgaagttggatgctcagacaaccaagcaagaagcgatggatgaaaagcttaatttga 715  Q
    || ||||||||| |||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7144026 aatatcataattgagttggctgctcaaagcacttctacagaaatgaaggtggatgctcagacaaccaagcaagaagcgatggatgaaaagcttaatttga 7144125  T
Q  716 tactcaatctaatgagtagtagaaacacttggg 748  Q
    || ||||||| ||||||||||||||||||||||    
T  7144126 taatcaatctgatgagtagtagaaacacttggg 7144158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 160 - 317
Target Start/End: Original strand, 7142483 - 7142642
Alignment:
Q  160 agtgcaaaagactagttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggtt 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||    
T  7142483 agtgcaaaagactagttctcttctcctacatcctacctaatcatttgctataaatagagactcttgcactcattattattcatttagaacactgacggtt 7142582  T
Q  258 caagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7142583 caagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 7142642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 7141340 - 7141489
Alignment:
Q  12 attatactcgtatgacatctaggcgtggtagatagtgaggagacattgctctcatttcaagtctcctcaaggttgtgaaggttttgttgcttctctgatc 111  Q
    ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  7141340 attatactcgtatgacatctaggcgtggtaggtaatggggagacattgctctcatttcacgtctcctcaaggttgtgaaggttttgttgctactctgatc 7141439  T
Q  112 acttcctatttcacaaacattttagaaaatctgcaatattctgatttaag 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141440 acttcctatttcacaaacattttagaaaatctgcaatattctgatttaag 7141489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 9405466 - 9405377
Alignment:
Q  228 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    ||||||| |||||| |||||| |||||||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||||    
T  9405466 cattatttttcattcagaacaataacggttcaagacaagggtcaaacgtcagagcttcaaggcaggatttattccttctcttgttctctc 9405377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 10670205 - 10670060
Alignment:
Q  173 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 270  Q
    |||| |||||||||| | ||||||||||||||| |||||||||||||| | |||||  |||||| |||||| | |||| | | |||||||  ||| ||||    
T  10670205 agttatcttctcctaaaccctacccaatcattttctataaatagagacccttgcactcattatttttcattcaaaacattgatggttcaaagcaagggtc 10670106  T
Q  271 aaacattagagcttcaaggcaagatttcttccttctcttgttctct 316  Q
    |||||| || ||||||||||| ||||| ||| ||||||||||||||    
T  10670105 aaacatcagggcttcaaggcaggatttattcgttctcttgttctct 10670060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 325
Target Start/End: Original strand, 9070895 - 9071025
Alignment:
Q  198 aatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagat 295  Q
    |||| ||| |||||||||||||| | |||||  ||||||||||||| | |||||  ||||||||||  ||| ||||| ||| |||||||||||||| |||    
T  9070895 aatccttttctataaatagagacccttgcacttattattattcattcaaaacaccgacggttcaaggaaaatgtcaagcatcagagcttcaaggcatgat 9070994  T
Q  296 ttcttccttctcttgttctctc-aaggtatg 325  Q
    |||||||||||||| ||||||| ||||||||    
T  9070995 ttcttccttctcttcttctctctaaggtatg 9071025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 26839779 - 26839717
Alignment:
Q  250 taacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgtt 312  Q
    |||||||||||| ||| |||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  26839779 taacggttcaaggcaagggtcaagcatcagagcttcaaggcaggatttcttcattctcttgtt 26839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 3400295 - 3400375
Alignment:
Q  200 tcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacatta 278  Q
    |||| |||||||||||||||||| |||||  ||| ||||||||||||||  ||||||||||||| | | |||||| |||||    
T  3400295 tcatatgctataaatagagactcttgcacgcattcttattcatttagaaatctaacggttcaaggcgagggtcaagcatta 3400375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 165 - 317
Target Start/End: Complemental strand, 47024427 - 47024273
Alignment:
Q  165 aaaagactagttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaaga 262  Q
    ||||| |||| | |||||||||||| ||||   ||| |||| |||||||||||||| | |||||  |||||||||||||||||||| | |||||||||||    
T  47024427 aaaagtctagatttcttctcctacaccctaattaattattttctataaatagagacccttgcactaattattattcatttagaacattgacggttcaaga 47024328  T
Q  263 caaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    ||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  47024327 caagggtcaagcatcaaagcctcaaggcaagatttcttccttctcttgttctctc 47024273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 191 - 317
Target Start/End: Complemental strand, 17024577 - 17024449
Alignment:
Q  191 cctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaag 288  Q
    |||||| |||||||  |||||||||||||| | | |||  ||||||||||||| |||||| | |||||||||| ||| |||||| |||  ||||| ||||    
T  17024577 cctacctaatcattcactataaatagagacccttacactcattattattcattcagaacattgacggttcaaggcaagggtcaagcatcggagctccaag 17024478  T
Q  289 gcaagatttcttccttctcttgttctctc 317  Q
    ||||||||||||| |||||||||||||||    
T  17024477 gcaagatttcttctttctcttgttctctc 17024449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 178 - 317
Target Start/End: Complemental strand, 10451145 - 10451002
Alignment:
Q  178 tcttctcctacatcctacccaatcatttgctataaatagagactcgtg--cacattattattcatttag-aacac-taacggttcaagacaaa-ggtcaa 272  Q
    |||||||||| | ||||||||||||||| |||||||| ||||||| ||  | |||||||||||||| || ||||| | ||||||  || |||| ||||||    
T  10451145 tcttctcctaaaccctacccaatcattttctataaattgagactcttgctctcattattattcattcagaaacacttgacggttggaggcaaagggtcaa 10451046  T
Q  273 acattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    |||| |||||||||||||| || ||||||||||| ||||||||||    
T  10451045 acatcagagcttcaaggcagga-ttcttccttcttttgttctctc 10451002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 12806539 - 12806479
Alignment:
Q  257 tcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    |||||| ||||||||||||| ||||||||||| ||| ||||||||||| | ||||||||||    
T  12806539 tcaagaaaaaggtcaaacatcagagcttcaagacaatatttcttccttttgttgttctctc 12806479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 10319890 - 10319794
Alignment:
Q  178 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgca--cattattattcatttagaacactaacggttcaagacaaaggtcaa 272  Q
    |||||||||| | |||||| |||||||||||||||||||||||   || |  ||||||| |||||  ||||||||||||||| ||| ||| ||||||    
T  10319890 tcttctcctaaaccctacctaatcatttgctataaatagagacatttgaattcattatttttcatccagaacactaacggttgaaggcaagggtcaa 10319794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 26329723 - 26329585
Alignment:
Q  173 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 270  Q
    |||| |||||||||| | ||||||||||| |||||||||||||||  | | |||||  |||||| | ||| ||||||||||| |||||||| ||| ||||    
T  26329723 agttttcttctcctaaaccctacccaatcgtttgctataaatagatgcccttgcactcattattttccatatagaacactaatggttcaaggcaagggtc 26329624  T
Q  271 aaacattagagcttcaaggcaagatttcttccttctctt 309  Q
    || |||||||||||||||||| |||||||||||||||||    
T  26329623 aagcattagagcttcaaggcaggatttcttccttctctt 26329585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 12265217 - 12265126
Alignment:
Q  226 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    |||| ||||||||||||||||  | | |||||||||  || |||||| ||| |||| ||||||| | |||||||||||||||||||||||||    
T  12265217 cacaatattattcatttagaaagccagcggttcaaggtaatggtcaagcatcagagtttcaaggtaggatttcttccttctcttgttctctc 12265126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 20715083 - 20715172
Alignment:
Q  226 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 316  Q
    ||||| || |||||||||||||| | | |||| ||||||| |||||| ||| |||||||||  |||||| |||||||||||||||||||||    
T  20715083 cacataataattcatttagaacattgatggttaaagacaagggtcaagcatcagagcttcagagcaaga-ttcttccttctcttgttctct 20715172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 17028776 - 17028857
Alignment:
Q  236 ttcatttag-aacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 316  Q
    ||||||||| |||| |||| ||||||| ||| |||||||||| |||||||||| |||  |||||||||||  ||||||||||    
T  17028776 ttcatttagtaacattaacagttcaaggcaagggtcaaacatcagagcttcaatgcagtatttcttccttaccttgttctct 17028857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 178 - 317
Target Start/End: Complemental strand, 5398 - 5257
Alignment:
Q  178 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaaca 275  Q
    |||||||||| | |||||| | | |||  |||||||||||||| | |||||  ||||||||||||| |||||||| |||||||||| ||| |||||| ||    
T  5398 tcttctcctaaaacctacctagttattatctataaatagagacccttgcactcattattattcattaagaacactgacggttcaaggcaagggtcaagca 5299  T
Q  276 ttagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    | |||||||||||||| ||||||||| |||||||||||||||    
T  5298 tcagagcttcaaggcaggatttcttcattctcttgttctctc 5257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 13911745 - 13911884
Alignment:
Q  179 cttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacat 276  Q
    ||||||| | ||||||||||||||||| |||||||||||||| | |||||  ||||||||| ||| || ||||| || ||||||| ||| ||||||  ||    
T  13911745 cttctccaaaatcctacccaatcattttctataaatagagacccttgcactcattattattgattgaggacactgacagttcaaggcaagggtcaagtat 13911844  T
Q  277 tagagcttcaaggcaagatttcttccttctcttgttctct 316  Q
     | |||||||||||| ||||| ||||||||||||||||||    
T  13911845 catagcttcaaggcatgattttttccttctcttgttctct 13911884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 33578234 - 33578320
Alignment:
Q  207 ctataaatagagactcgtgcacat--tattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggca 291  Q
    |||||||||||||| | ||||||   | ||||||||||||||  ||| ||||||||| ||| |||||||||||||||||||||||||    
T  33578234 ctataaatagagacacttgcacacacttttattcatttagaaagctagcggttcaaggcaatggtcaaacattagagcttcaaggca 33578320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 33914186 - 33914126
Alignment:
Q  254 ggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttct 314  Q
    |||||||| |||||||||||||| |||| |||| | ||| |||||||||| ||||||||||    
T  33914186 ggttcaaggcaaaggtcaaacatcagagtttcatgacaaaatttcttcctcctcttgttct 33914126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 173 - 317
Target Start/End: Original strand, 26657936 - 26658082
Alignment:
Q  173 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 270  Q
    |||| |||||||||| | |||||||||||||||| |||||||||| || |  ||||  |||||| || ||| ||||||||  | ||||||| ||| ||||    
T  26657936 agttttcttctcctaaaccctacccaatcatttgttataaatagataccctagcactcattattttttattcagaacactggcagttcaaggcaagggtc 26658035  T
Q  271 aaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    || ||| |||||||||||| | ||||||||| |||||||||||||||    
T  26658036 aagcatcagagcttcaaggaatgatttcttcattctcttgttctctc 26658082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 316
Target Start/End: Complemental strand, 23519370 - 23519259
Alignment:
Q  205 tgctataaatagagactcgtgcaca--ttattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttcc 302  Q
    |||||||||||||||| | ||||||  ||||  ||||||||||||| | ||||| | || ||| ||||||||||||||||||||| | | |||| |||||    
T  23519370 tgctataaatagagacccttgcacacattatagttcatttagaacattgacggt-ctaggcaagggtcaaacattagagcttcaacgtaggatt-cttcc 23519273  T
Q  303 ttctcttgttctct 316  Q
    ||||||||||||||    
T  23519272 ttctcttgttctct 23519259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 12810635 - 12810751
Alignment:
Q  202 atttgctataaatagagactcgtgcacat--tattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttct 299  Q
    |||| ||||||||||| |||| |||||||  ||||||||||| |||||||| ||  ||||||  || |||||||  | | |||||||||||| |||||      
T  12810635 attttctataaatagaaactcttgcacatattattattcattcagaacactgacaattcaaggaaagggtcaaaactcaaagcttcaaggcaggattttg 12810734  T
Q  300 tccttctcttgttctct 316  Q
    || ||||||||||||||    
T  12810735 tcattctcttgttctct 12810751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 34533099 - 34533163
Alignment:
Q  198 aatcatttgctataaatagagactcgtgcaca--ttattattcatttagaacactaacggttcaa 260  Q
    |||||| || ||||||||||||||| ||||||  || |||||||||||||| |||||| ||||||    
T  34533099 aatcatatgatataaatagagactcttgcacacattcttattcatttagaaaactaacagttcaa 34533163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 22892851 - 22892762
Alignment:
Q  228 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    ||||||| |||||| |||||||  |||||||||| ||| |||||| ||| |||| ||||||| | |||||||||||||||||||||||||    
T  22892851 cattatttttcattcagaacacggacggttcaaggcaagggtcaagcatcagagtttcaaggaaggatttcttccttctcttgttctctc 22892762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 11309903 - 11309814
Alignment:
Q  228 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    |||||||||||||| ||||||||    | ||||||||| |||||||||| ||||||||||| |||| | ||||||| |||||||||||||    
T  11309903 cattattattcattcagaacactggaagatcaagacaatggtcaaacatcagagcttcaagacaagttatcttcctcctcttgttctctc 11309814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 32239765 - 32239853
Alignment:
Q  226 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttct 314  Q
    |||||||||||| ||| ||||  ||| ||||||||  ||||||||||||||||||| |  ||||||||||||| |||| ||||||||||    
T  32239765 cacattattatttattcagaaagctagcggttcaatgcaaaggtcaaacattagagttcaaaggcaagatttcatcctcctcttgttct 32239853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 28900962 - 28900845
Alignment:
Q  202 atttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttct 299  Q
    |||| ||||||||||||||   |||||  ||||||||   ||||||||||| ||| |||||  |||| || | |||| |||||||||||| | |||||||    
T  28900962 attttctataaatagagaccattgcactcattattatggctttagaacactgacgcttcaaagcaaaagttagacatcagagcttcaaggtaggatttct 28900863  T
Q  300 tccttctcttgttctctc 317  Q
    |||||||  |||||||||    
T  28900862 tccttcttgtgttctctc 28900845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 17860094 - 17860003
Alignment:
Q  226 cacattattattcatt-tagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 316  Q
    |||||||||||||||| |  |||| | |||||||||  ||| |||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  17860094 cacattattattcattcttaaacattgacggttcaatgcaagggtcaaacatcagagcttcaaggcatgatttcttccttctctggttctct 17860003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 30235981 - 30235890
Alignment:
Q  226 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 317  Q
    ||||||||| || ||| |||| |||| |||||||||| || |||||||||| |||| || |||| | ||||||||||| |||||||||||||    
T  30235981 cacattattttttattcagaaaactagcggttcaagaaaagggtcaaacatcagagttttaaggtaggatttcttcctcctcttgttctctc 30235890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University