View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15817_high_5 (Length: 309)
Name: NF15817_high_5
Description: NF15817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15817_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 9083689 - 9083819
Alignment:
| Q |
9 |
agcacagacacttatgatcaaagacgtgtagcacgtcctatccgtgccaatgtcgtacacatttgattatattcaattacaatgtcagtgtgccaaaatt |
108 |
Q |
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| T |
9083689 |
agcacagacacttatgatcaaagacgtgtagcacgtcctatccgtgccaatgtcgtacacatttgattatattcaattacaatgtcagtgtgccaaaatt |
9083788 |
T |
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| Q |
109 |
gtatctggtgtctatgtcaatgcttcagagt |
139 |
Q |
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| T |
9083789 |
gtatctggtgtctatgtcaatgcttcagagt |
9083819 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 9083513 - 9083571
Alignment:
| Q |
29 |
aagacgtgtagcacgtcctatccgtgccaatgtcgtacacatttgattatattcaatta |
87 |
Q |
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|||||||||||||||||| ||||||| || |||| |||||| |||||||||||||||| |
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| T |
9083513 |
aagacgtgtagcacgtccaatccgtgtcagtgtccaacacatgtgattatattcaatta |
9083571 |
T |
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