View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15817_low_2 (Length: 664)
Name: NF15817_low_2
Description: NF15817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15817_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 43 - 649
Target Start/End: Complemental strand, 2719829 - 2719223
Alignment:
| Q |
43 |
tggtggtcaagatctaacagaaatgtggctgatataatatacaaagaggaatttgtttgttgattcattgagtggagaacatagagtatatgatgagagg |
142 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2719829 |
tggtggtcaagatctaacaaaaatgtggctgatataatataaaaa-aggaatttgtttgttgattcattgagtggagaacatagagtat--gatgagagg |
2719733 |
T |
|
| Q |
143 |
gttttatttgtggtgacagtgaggccactagaggccgatttgcgaccacaaagaatggtggtagctagggtttgcaaagagaaaacagagagacaaaaag |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2719732 |
gttttatttgtggtgacagtgaggccactcgaggccgatttgcgaccacaaagaatggtggtagctaaggtttgcaaagagaaaagagagagacaaaaag |
2719633 |
T |
|
| Q |
243 |
gtgattttattgattcatttacaaagagaaaatgcccttccagattatttcttcccatcccctaatatattt---ttctttttactaaatgacactcaca |
339 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |||||| ||| || ||||||||||||| |||||||| |
|
|
| T |
2719632 |
gtgattttattgattcatttacaaacagaaaatgccctttcagattatttcttctcatcccataatatttttattttttttttactaaatggcactcaca |
2719533 |
T |
|
| Q |
340 |
aagaaaaggcccactatcaagattaatctaaacaattttttatgttgttttgaaatgaccaaggtgagggtttgtatatatgtagagaaaataaaagaga |
439 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2719532 |
aagaaaaggcccaccatcaagattaatctaaacaattttttatgttgttttgaaatgaccaaggtgagggtttgtatatatgtagagaaaataaaagaga |
2719433 |
T |
|
| Q |
440 |
tggttagaagttacgtgggtaacactattatatagctgagaaaaagtaaaatatagaactccctcgccacttacctaaaccaacatgatttgtatgaact |
539 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2719432 |
tggttagaagttacgcgggtaacactattatatagctgagaaaaagtaaaatatagaactccctcgccacttacctaaaccaacatgatttgtatgaact |
2719333 |
T |
|
| Q |
540 |
taagtctaagtttatattgaaaggtagtttggtagaataggaacacatgaactttatatttgtatttgcaacatattaaaacaaaatacaaacctacaaa |
639 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2719332 |
taagtctaagtttataatgaaaggtagtttggtagaataggaacacatgaactttatatttgtatttgcaacatattaaaacaaaatacaaacctacaaa |
2719233 |
T |
|
| Q |
640 |
gggttgttgg |
649 |
Q |
| |
|
|||||||||| |
|
|
| T |
2719232 |
gggttgttgg |
2719223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University