View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15817_low_3 (Length: 466)
Name: NF15817_low_3
Description: NF15817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15817_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 73 - 450
Target Start/End: Complemental strand, 27745671 - 27745295
Alignment:
| Q |
73 |
gattaaatattctaagatatacattggggatgcaagtatatctatcatcattacagttaaaaaatccatgctgcagacaaaaatacaataatatgaatta |
172 |
Q |
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| T |
27745671 |
gattaaatattctaagatatacattggggatgcaagtatatctaccatcattacagttaaaaaatccatgctgcagacaaaaatacaataatatgaatta |
27745572 |
T |
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| Q |
173 |
tacgtgtcttgattgcttaccatgtgttttaaggagtgtaatgtctatcaaacaaagcatgtgtgacactaaaacatataatagaccacaatgatcgttt |
272 |
Q |
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| T |
27745571 |
tacatgtcttgattgcttaccatgtgttttaaggagtgtaatgtctatcaaacaaagcatgtgtgacactaaaacatataatagaccacaatgatcgttt |
27745472 |
T |
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| Q |
273 |
gctacacgacaagaaaggtaggaagaagaaaaaagaacgatattttcttagtcaccatgtttacacattactcttcagtgttaaagtaagcttggaacac |
372 |
Q |
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| T |
27745471 |
gctacacgacaagaaaggtatgaagaagaaaaaagaacgatatttt-taagtctccatgtttacacattactcttcagtgttaaagtaagcttggaacac |
27745373 |
T |
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| Q |
373 |
catgcaatacttacagaatgatacaatgaatgcttaaaaggatgttcaacaatcttcaattctaaatgttggtaagaa |
450 |
Q |
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| T |
27745372 |
catgcaatacttacagaatgatacaatgaatgcttaaaaggaagttcaacaatcttcaattctaaatgttggtaagaa |
27745295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 280 - 443
Target Start/End: Complemental strand, 49513833 - 49513670
Alignment:
| Q |
280 |
gacaagaaaggtaggaagaagaaaaaagaacgatattttcttagtcaccatgtttacacattactcttcagtgttaaagtaagcttggaacaccatgcaa |
379 |
Q |
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| T |
49513833 |
gacaaaaaaggtaggaagaagaaaaaagaatgatgttgtcttattcaccatgtttacacattacttttgagtgttaaagtatgtttggaacatcatgcaa |
49513734 |
T |
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| Q |
380 |
tacttacagaatgatacaatgaatgcttaaaaggatgttcaacaatcttcaattctaaatgttg |
443 |
Q |
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| T |
49513733 |
tacttacagcttgatataatgaattcttaaagggaagtttaacaatattaaattccaaatgttg |
49513670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 49514088 - 49514024
Alignment:
| Q |
81 |
attctaagatatacattggggatgcaagtatatctatcatcattacagttaaaaaatccatgctg |
145 |
Q |
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| T |
49514088 |
attctaagatatacattgcggatacgagtatacttatcatcgttacggataaaaaatctatgctg |
49514024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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