View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15817_low_4 (Length: 348)
Name: NF15817_low_4
Description: NF15817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15817_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 39794693 - 39795020
Alignment:
| Q |
1 |
atacattatatgctactcttcaccaatgtataggaccacaatagcatgtaacgttattgctgggaaattagttgcattgttggactcagtctagagctta |
100 |
Q |
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| T |
39794693 |
atacattatatgctactcttcaccaatgtataggaccacaatagcatgtaacgttattg---ggaaattagttgcattgttggactcagtctagagctta |
39794789 |
T |
|
| Q |
101 |
aaataatggcagtaagagcttcaatgatataatcgcagtaagaacttgaaagttaaaatccaattacatatataaataatatgaaaagcaattgattaca |
200 |
Q |
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| T |
39794790 |
aaataatggcagtaagagcatcaatgatataatcgcagtaagaacttgaaagttaaaatccaattacatatataaataatatgaaaagcaattgattaca |
39794889 |
T |
|
| Q |
201 |
aaatttacaagctttgtgtacccacatgtacaatgttatttatttacgagaaacccacaaaaacaagttaaacttgtcaagaaataatgaattaatgaaa |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39794890 |
aaatttacaagctttgtgtaaccacatgtacaatgttatttatttacgagaaacccacaaaaacaagttaaacttgtcaagaaataatgaattaatgaaa |
39794989 |
T |
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| Q |
301 |
tattcaaatacatgcatgtgacattacttat |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
39794990 |
tattcaaatacatgcatgtgacattacttat |
39795020 |
T |
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